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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1134R-1 
 Symbol CG1134  Full Name CG1134 
 CG No CG1134  Old CG No CG1134 
 Synonyms CG1134 
 Accession No (Link to NCBI) NM_139590.2 
 Inserted Chr.
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCACTGGGCGTGGATCTGCTAA 
 Primer Seq. 3'
aatctagaggtaccCGTCGTTTGCAATCCCCTCTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CACTGGGCGT GGATCTGCTA ATACTTGGCC TGTGTGCGCG CGAGTACGTG CACTACAAGC 
0061 GAACTGCCAA GGTGCTGAAG GCGGCACCAC AATACAACAT CGATGGAGAC CTAAAATCGG 
0121 TGGTGGAGCG GCAGCGCGAN CAAGNAAGAT ACCATATGCG GTAATCCGGG GCACAGTGAC 
0181 GCCCATCGGG GTGCCACTGA GGAGCTCCCT GGTGCCCAGT GTGAGTGGAG TGCTGCAGAT 
0241 TGTGAAGCTG CATGAGCACA GGGTAACGCG CGGATTCGCC GGCTTCTGGA CGGAACAACA 
0301 CAAGTTGCTG CACGAATCCG CCAACGAGAT GCCCTTCGAG TTGCGTAACC AGAGCCATGG 
0361 TGTGGAGATT GTGGACGCCT TGAGTGCCGC CGTCTTGGAC GTGGACGTGG TCTACGACAA 
0421 CTACGAGCCC TCCAATCTGT CCCTCTTCGA CCATGTGTTT GGTTTCTTCT CTGGCGTCCG 
0481 TCAGAGGGGA TTGCAAACGA CG 
 in silico PCR Fragment
0001 CACTGGGCGT GGATCTGCTA ATACTTGGCC TGTGTGCGCG CGAGTACGTG CACTACAAGC 
0061 GAACTGCCAA GGTGCTGAAG GCGGCACCAC AATACAACAT CGATGGAGAC CTAAAATCGG 
0121 TGGTGGAGCG GCAGCGCGA- CAAG-AAGAT ACCATATGCG GTAATCCGGG GCACAGTGAC 
0181 GCCCATCGGG GTGCCACTGA GGAGCTCCCT GGTGCCCAGT GTGAGTGGAG TGCTGCAGAT 
0241 TGTGAAGCTG CATGAGCACA GGGTAACGCG CGGATTCGCC GGCTTCTGGA CGGAACAACA 
0301 CAAGTTGCTG CACGAATCCG CCAACGAGAT GCCCTTCGAG TTGCGTAACC AGAGCCATGG 
0361 TGTGGAGATT GTGGACGCCT TGAGTGCCGC CGTCTTGGAC GTGGACGTGG TCTACGACAA 
0421 CTACGAGCCC TCCAATCTGT CCCTCTTCGA CCATGTGTTT GGTTTCTTCT CTGGCGTCCG 
0481 TCAGAGGGGA TTGCAAACGA CG 
 Assemble Data

1134R-1.IR_full       1   CACTGGGCGTGGATCTGCTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAGC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     1   CACTGGGCGTGGATCTGCTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAGC 60


1134R-1.IR_full       61  GAACTGCCAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGACCTAAAATCGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     61  GAACTGCCAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGACCTAAAATCGG 120


1134R-1.IR_full       121 TGGTGGAGCGGCAGCGCGANCAAGNAAGATACCATATGCGGTAATCCGGGGCACAGTGAC 180
                          ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
1134R-1.in silico     121 TGGTGGAGCGGCAGCGCGA-CAAG-AAGATACCATATGCGGTAATCCGGGGCACAGTGAC 180


1134R-1.IR_full       181 GCCCATCGGGGTGCCACTGAGGAGCTCCCTGGTGCCCAGTGTGAGTGGAGTGCTGCAGAT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     181 GCCCATCGGGGTGCCACTGAGGAGCTCCCTGGTGCCCAGTGTGAGTGGAGTGCTGCAGAT 240


1134R-1.IR_full       241 TGTGAAGCTGCATGAGCACAGGGTAACGCGCGGATTCGCCGGCTTCTGGACGGAACAACA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     241 TGTGAAGCTGCATGAGCACAGGGTAACGCGCGGATTCGCCGGCTTCTGGACGGAACAACA 300


1134R-1.IR_full       301 CAAGTTGCTGCACGAATCCGCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     301 CAAGTTGCTGCACGAATCCGCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGG 360


1134R-1.IR_full       361 TGTGGAGATTGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGTCTACGACAA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     361 TGTGGAGATTGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGTCTACGACAA 420


1134R-1.IR_full       421 CTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTCTCTGGCGTCCG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1134R-1.in silico     421 CTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTCTCTGGCGTCCG 480


1134R-1.IR_full       481 TCAGAGGGGATTGCAAACGACG 502
                          ||||||||||||||||||||||
1134R-1.in silico     481 TCAGAGGGGATTGCAAACGACG 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_139590.2  CG1134-RA (CG1134), mRNA 
0.82   NM_137625.1  CG16868-RA (CG16868), mRNA 
0.2   NM_153771.2  CG8920-RC, transcript variant C (CG8920), mRNA 
0.2   NM_137631.5  CG8920-RB, transcript variant B (CG8920), mRNA 
0   NM_142710.2  CG16791-RA (CG16791), mRNA 
0   NM_136667.2  CG1794-RA, transcript variant A (Mmp2), mRNA 
0   NM_132483.2  CG1737-RA (CG1737), mRNA 
0   NM_132921.1  CG9673-RA (CG9673), mRNA 
0   NM_139549.1  CG11526-RB, transcript variant B (CG11526), mRNA 
0   NM_168023.1  CG11526-RA, transcript variant A (CG11526), mRNA 
0   NM_206066.1  CG1794-RB, transcript variant B (Mmp2), mRNA 
0   NM_080125.2  CG4399-RB (east), mRNA 
0   NM_079308.2  CG18593-RA (viaf), mRNA 
0   11  NM_164569.2  CG31774-RA (fred), mRNA 
0   NM_143422.1  CG11898-RA (CG11898), mRNA 
0   NM_138103.2  CG3608-RA (CG3608), mRNA 
0   NM_137806.2  CG5465-RA (MED16), mRNA 
0   NM_168665.1  CG13035-RB, transcript variant B (CG13035), mRNA 
0   NM_140635.1  CG13035-RA, transcript variant A (CG13035), mRNA 
0   NM_167873.1  CG2199-RB, transcript variant B (CG2199), mRNA 
0   NM_138260.4  CG2199-RA, transcript variant A (CG2199), mRNA 
0   NM_139552.2  CG14969-RA (CG14969), mRNA 
0   NM_132577.1  CG2556-RA (CG2556), mRNA 
0   NM_134987.1  CG15431-RA (CG15431), mRNA 
0   NM_136499.2  CG8722-RA, transcript variant A (Nup44A), mRNA 
0   NM_165583.1  CG8722-RC, transcript variant C (Nup44A), mRNA 
0   NM_165582.1  CG8722-RB, transcript variant B (Nup44A), mRNA 
0   NM_135375.2  CG17294-RA (CG17294), mRNA 
0   NM_080186.2  CG2830-RA (Hsp60B), mRNA 
0   NM_132310.2  CG2194-RB, transcript variant B (Reg-3), mRNA 

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