|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
temporarily unavailable
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
11325R-1 |
Symbol |
GRHR |
Full Name |
Gonadotropin-releasing hormone receptor |
CG No |
CG11325 |
Old CG No |
CG11325 |
Synonyms |
CG11325, DAKHR, GRHR/CG11325, DGRHR, unnamed, BEST:GH19447, GRHR |
Accession No (Link to NCBI) |
NM_058039.2 |
Inserted Chr. |
ll |
Insertional Mutation |
rough eye |
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
|
Reference
[Please submit your publication]
|
Ibaraki K, Nakatsuka M, Ohsako T, Watanabe M, Miyazaki Y, Shirakami M, Karr TL, Sanuki R, Tomaru M, Takano-Shimizu-Kouno T. A cross-species approach for the identification of Drosophila male sterility genes. G3 (Bethesda) (2021) 11(8)
[
PubMed ID = 34849808
]
[
RRC reference
]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K. Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila. PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACCAATGGCACCATTCACCTG |
Primer Seq. 3' |
aatctagaggtaccCACTGAAAGTAGCCGGTGACG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACCAATGGCA CCATTCACCT GACCAAGGAT ATGGTCTTCA ATGATGGCCA CCGATTGTCC
0061 ATCACCGTGT ACAGCATACT GTTTGTGATC TCAACAATTG GCAACAGCAC CGTGCTGTAT
0121 CTGCTGACCA AGCGGCGACT GCGCGGTCCC TTGCGTATTG ATATCATGCT AATGCATCTG
0181 GCCATCGCCG ATCTAATGGT GACGCTGCTC CTGATGCCAA TGGAGATCGT GTGGGCCTGG
0241 ACGGTGCAGT GGCTATCCAC GGACCTGATG TGCCGCCTGA TGAGCTTTTT CCGCGTCTTT
0301 GGCCTGTATC TGTCCAGCTA CGTGATGGTC TGCATATCGC TCGACAGATA CTTTGCCATA
0361 CTGANAGCCG CTCAAGCGGT CCTACAACCG GGNGACGCAT CATGCTGGCC TGCGCCTGGC
0421 TGGGATCAGT CGTCTGCAGC ATTCCACAGG CCTTTCTCTT CCATCTGGAG GAGCANCNCN
0481 CCNTCACCGG CTACTTTCAN GTg |
in silico PCR Fragment |
0001 ACCAATGGCA CCATTCACCT GACCAAGGAT ATGGTCTTCA ATGATGGCCA CCGATTGTCC
0061 ATCACCGTGT ACAGCATACT GTTTGTGATC TCAACAATTG GCAACAGCAC CGTGCTGTAT
0121 CTGCTGACCA AGCGGCGACT GCGCGGTCCC TTGCGTATTG ATATCATGCT AATGCATCTG
0181 GCCATCGCCG ATCTAATGGT GACGCTGCTC CTGATGCCAA TGGAGATCGT GTGGGCCTGG
0241 ACGGTGCAGT GGCTATCCAC GGACCTGATG TGCCGCCTGA TGAGCTTTTT CCGCGTCTTT
0301 GGCCTGTATC TGTCCAGCTA CGTGATGGTC TGCATATCGC TCGACAGATA CTTTGCCATA
0361 CTGA-AGCCG CTCAAGCGGT CCTACAACCG GG-GACGCAT CATGCTGGCC TGCGCCTGGC
0421 TGGGATCAGT CGTCTGCAGC ATTCCACAGG CCTTTCTCTT CCATCTGGAG GAGCATCCCG
0481 CCGTCACCGG CTACTTTCA- GTG |
Assemble Data |
11325R-1.IR_full 1 ACCAATGGCACCATTCACCTGACCAAGGATATGGTCTTCAATGATGGCCACCGATTGTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 1 ACCAATGGCACCATTCACCTGACCAAGGATATGGTCTTCAATGATGGCCACCGATTGTCC 60
11325R-1.IR_full 61 ATCACCGTGTACAGCATACTGTTTGTGATCTCAACAATTGGCAACAGCACCGTGCTGTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 61 ATCACCGTGTACAGCATACTGTTTGTGATCTCAACAATTGGCAACAGCACCGTGCTGTAT 120
11325R-1.IR_full 121 CTGCTGACCAAGCGGCGACTGCGCGGTCCCTTGCGTATTGATATCATGCTAATGCATCTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 121 CTGCTGACCAAGCGGCGACTGCGCGGTCCCTTGCGTATTGATATCATGCTAATGCATCTG 180
11325R-1.IR_full 181 GCCATCGCCGATCTAATGGTGACGCTGCTCCTGATGCCAATGGAGATCGTGTGGGCCTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 181 GCCATCGCCGATCTAATGGTGACGCTGCTCCTGATGCCAATGGAGATCGTGTGGGCCTGG 240
11325R-1.IR_full 241 ACGGTGCAGTGGCTATCCACGGACCTGATGTGCCGCCTGATGAGCTTTTTCCGCGTCTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 241 ACGGTGCAGTGGCTATCCACGGACCTGATGTGCCGCCTGATGAGCTTTTTCCGCGTCTTT 300
11325R-1.IR_full 301 GGCCTGTATCTGTCCAGCTACGTGATGGTCTGCATATCGCTCGACAGATACTTTGCCATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico 301 GGCCTGTATCTGTCCAGCTACGTGATGGTCTGCATATCGCTCGACAGATACTTTGCCATA 360
11325R-1.IR_full 361 CTGANAGCCGCTCAAGCGGTCCTACAACCGGGNGACGCATCATGCTGGCCTGCGCCTGGC 420
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
11325R-1.in silico 361 CTGA-AGCCGCTCAAGCGGTCCTACAACCGGG-GACGCATCATGCTGGCCTGCGCCTGGC 420
11325R-1.IR_full 421 TGGGATCAGTCGTCTGCAGCATTCCACAGGCCTTTCTCTTCCATCTGGAGGAGCANCNCN 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
11325R-1.in silico 421 TGGGATCAGTCGTCTGCAGCATTCCACAGGCCTTTCTCTTCCATCTGGAGGAGCATCCCG 480
11325R-1.IR_full 481 CCNTCACCGGCTACTTTCANGTG 503
|| |||||||||||||||| |||
11325R-1.in silico 481 CCGTCACCGGCTACTTTCA-GTG 503
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_058039.2 |
CG11325-RA, transcript variant A (GRHR), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_205917.1 |
CG11325-RC, transcript variant C (GRHR), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_164705.1 |
CG11325-RB, transcript variant B (GRHR), mRNA |
0 |
0 |
4 |
3 |
7 |
NM_001038975.1 |
CG6919-RB, transcript variant B (oa2), mRNA |
0 |
0 |
4 |
3 |
7 |
NM_142800.1 |
CG6919-RA, transcript variant A (oa2), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_140650.2 |
CG18217-RA (CG18217), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_135748.1 |
CG15483-RA (CG15483), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_164531.1 |
CG3332-RB, transcript variant B (CG3332), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_134914.2 |
CG3332-RA, transcript variant A (CG3332), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_166335.2 |
CG7097-RA, transcript variant A (CG7097), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_140966.1 |
CG5262-RA (CG5262), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167646.1 |
CG32827-RA (CG32827), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_133073.2 |
CG6394-RA, transcript variant A (GalNAc-T2), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_167623.1 |
CG6394-RB, transcript variant B (GalNAc-T2), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168882.2 |
CG32435-RB, transcript variant B (chb), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_141693.2 |
CG8507-RA (CG8507), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079912.3 |
CG32435-RA, transcript variant A (chb), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168883.1 |
CG32435-RC, transcript variant C (chb), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140583.1 |
CG12272-RA (CG12272), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_141912.2 |
CG10094-RA (Cyp313a2), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142683.2 |
CG7044-RA (CG7044), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_080015.2 |
CG5462-RD, transcript variant D (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_170276.1 |
CG5462-RB, transcript variant B (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_001043296.1 |
CG5462-RG, transcript variant G (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_170275.1 |
CG5462-RA, transcript variant A (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_001014669.1 |
CG5462-RI, transcript variant I (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_170277.1 |
CG5462-RC, transcript variant C (scrib), mRNA |
0 |
0 |
0 |
6 |
9 |
NM_001014670.2 |
CG5462-RH, transcript variant H (scrib), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_165051.2 |
CG7311-RB, transcript variant B (CG7311), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_135823.2 |
CG7311-RA, transcript variant A (CG7311), mRNA |
|
|
|