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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11325R-1 
 Symbol GRHR  Full Name Gonadotropin-releasing hormone receptor 
 CG No CG11325  Old CG No CG11325 
 Synonyms CG11325, DAKHR, GRHR/CG11325, DGRHR, unnamed, BEST:GH19447, GRHR 
 Accession No (Link to NCBI) NM_058039.2 
 Inserted Chr. ll 
 Insertional Mutation  rough eye 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ibaraki K, Nakatsuka M, Ohsako T, Watanabe M, Miyazaki Y, Shirakami M, Karr TL, Sanuki R, Tomaru M, Takano-Shimizu-Kouno T.
A cross-species approach for the identification of Drosophila male sterility genes.
G3 (Bethesda) (2021) 11(8) [ PubMed ID = 34849808 ] [ RRC reference ]

Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACCAATGGCACCATTCACCTG 
 Primer Seq. 3'
aatctagaggtaccCACTGAAAGTAGCCGGTGACG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACCAATGGCA CCATTCACCT GACCAAGGAT ATGGTCTTCA ATGATGGCCA CCGATTGTCC 
0061 ATCACCGTGT ACAGCATACT GTTTGTGATC TCAACAATTG GCAACAGCAC CGTGCTGTAT 
0121 CTGCTGACCA AGCGGCGACT GCGCGGTCCC TTGCGTATTG ATATCATGCT AATGCATCTG 
0181 GCCATCGCCG ATCTAATGGT GACGCTGCTC CTGATGCCAA TGGAGATCGT GTGGGCCTGG 
0241 ACGGTGCAGT GGCTATCCAC GGACCTGATG TGCCGCCTGA TGAGCTTTTT CCGCGTCTTT 
0301 GGCCTGTATC TGTCCAGCTA CGTGATGGTC TGCATATCGC TCGACAGATA CTTTGCCATA 
0361 CTGANAGCCG CTCAAGCGGT CCTACAACCG GGNGACGCAT CATGCTGGCC TGCGCCTGGC 
0421 TGGGATCAGT CGTCTGCAGC ATTCCACAGG CCTTTCTCTT CCATCTGGAG GAGCANCNCN 
0481 CCNTCACCGG CTACTTTCAN GTg 
 in silico PCR Fragment
0001 ACCAATGGCA CCATTCACCT GACCAAGGAT ATGGTCTTCA ATGATGGCCA CCGATTGTCC 
0061 ATCACCGTGT ACAGCATACT GTTTGTGATC TCAACAATTG GCAACAGCAC CGTGCTGTAT 
0121 CTGCTGACCA AGCGGCGACT GCGCGGTCCC TTGCGTATTG ATATCATGCT AATGCATCTG 
0181 GCCATCGCCG ATCTAATGGT GACGCTGCTC CTGATGCCAA TGGAGATCGT GTGGGCCTGG 
0241 ACGGTGCAGT GGCTATCCAC GGACCTGATG TGCCGCCTGA TGAGCTTTTT CCGCGTCTTT 
0301 GGCCTGTATC TGTCCAGCTA CGTGATGGTC TGCATATCGC TCGACAGATA CTTTGCCATA 
0361 CTGA-AGCCG CTCAAGCGGT CCTACAACCG GG-GACGCAT CATGCTGGCC TGCGCCTGGC 
0421 TGGGATCAGT CGTCTGCAGC ATTCCACAGG CCTTTCTCTT CCATCTGGAG GAGCATCCCG 
0481 CCGTCACCGG CTACTTTCA- GTG 
 Assemble Data

11325R-1.IR_full       1   ACCAATGGCACCATTCACCTGACCAAGGATATGGTCTTCAATGATGGCCACCGATTGTCC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     1   ACCAATGGCACCATTCACCTGACCAAGGATATGGTCTTCAATGATGGCCACCGATTGTCC 60


11325R-1.IR_full       61  ATCACCGTGTACAGCATACTGTTTGTGATCTCAACAATTGGCAACAGCACCGTGCTGTAT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     61  ATCACCGTGTACAGCATACTGTTTGTGATCTCAACAATTGGCAACAGCACCGTGCTGTAT 120


11325R-1.IR_full       121 CTGCTGACCAAGCGGCGACTGCGCGGTCCCTTGCGTATTGATATCATGCTAATGCATCTG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     121 CTGCTGACCAAGCGGCGACTGCGCGGTCCCTTGCGTATTGATATCATGCTAATGCATCTG 180


11325R-1.IR_full       181 GCCATCGCCGATCTAATGGTGACGCTGCTCCTGATGCCAATGGAGATCGTGTGGGCCTGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     181 GCCATCGCCGATCTAATGGTGACGCTGCTCCTGATGCCAATGGAGATCGTGTGGGCCTGG 240


11325R-1.IR_full       241 ACGGTGCAGTGGCTATCCACGGACCTGATGTGCCGCCTGATGAGCTTTTTCCGCGTCTTT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     241 ACGGTGCAGTGGCTATCCACGGACCTGATGTGCCGCCTGATGAGCTTTTTCCGCGTCTTT 300


11325R-1.IR_full       301 GGCCTGTATCTGTCCAGCTACGTGATGGTCTGCATATCGCTCGACAGATACTTTGCCATA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11325R-1.in silico     301 GGCCTGTATCTGTCCAGCTACGTGATGGTCTGCATATCGCTCGACAGATACTTTGCCATA 360


11325R-1.IR_full       361 CTGANAGCCGCTCAAGCGGTCCTACAACCGGGNGACGCATCATGCTGGCCTGCGCCTGGC 420
                           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
11325R-1.in silico     361 CTGA-AGCCGCTCAAGCGGTCCTACAACCGGG-GACGCATCATGCTGGCCTGCGCCTGGC 420


11325R-1.IR_full       421 TGGGATCAGTCGTCTGCAGCATTCCACAGGCCTTTCTCTTCCATCTGGAGGAGCANCNCN 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | 
11325R-1.in silico     421 TGGGATCAGTCGTCTGCAGCATTCCACAGGCCTTTCTCTTCCATCTGGAGGAGCATCCCG 480


11325R-1.IR_full       481 CCNTCACCGGCTACTTTCANGTG 503
                           || |||||||||||||||| |||
11325R-1.in silico     481 CCGTCACCGGCTACTTTCA-GTG 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_058039.2  CG11325-RA, transcript variant A (GRHR), mRNA 
100   482  NM_205917.1  CG11325-RC, transcript variant C (GRHR), mRNA 
100   482  NM_164705.1  CG11325-RB, transcript variant B (GRHR), mRNA 
0   NM_001038975.1  CG6919-RB, transcript variant B (oa2), mRNA 
0   NM_142800.1  CG6919-RA, transcript variant A (oa2), mRNA 
0   NM_140650.2  CG18217-RA (CG18217), mRNA 
0   NM_135748.1  CG15483-RA (CG15483), mRNA 
0   NM_164531.1  CG3332-RB, transcript variant B (CG3332), mRNA 
0   NM_134914.2  CG3332-RA, transcript variant A (CG3332), mRNA 
0   NM_166335.2  CG7097-RA, transcript variant A (CG7097), mRNA 
0   NM_140966.1  CG5262-RA (CG5262), mRNA 
0   NM_167646.1  CG32827-RA (CG32827), mRNA 
0   NM_133073.2  CG6394-RA, transcript variant A (GalNAc-T2), mRNA 
0   NM_167623.1  CG6394-RB, transcript variant B (GalNAc-T2), mRNA 
0   NM_168882.2  CG32435-RB, transcript variant B (chb), mRNA 
0   NM_141693.2  CG8507-RA (CG8507), mRNA 
0   NM_079912.3  CG32435-RA, transcript variant A (chb), mRNA 
0   NM_168883.1  CG32435-RC, transcript variant C (chb), mRNA 
0   NM_140583.1  CG12272-RA (CG12272), mRNA 
0   NM_141912.2  CG10094-RA (Cyp313a2), mRNA 
0   NM_142683.2  CG7044-RA (CG7044), mRNA 
0   NM_080015.2  CG5462-RD, transcript variant D (scrib), mRNA 
0   NM_170276.1  CG5462-RB, transcript variant B (scrib), mRNA 
0   NM_001043296.1  CG5462-RG, transcript variant G (scrib), mRNA 
0   NM_170275.1  CG5462-RA, transcript variant A (scrib), mRNA 
0   NM_001014669.1  CG5462-RI, transcript variant I (scrib), mRNA 
0   NM_170277.1  CG5462-RC, transcript variant C (scrib), mRNA 
0   NM_001014670.2  CG5462-RH, transcript variant H (scrib), mRNA 
0   NM_165051.2  CG7311-RB, transcript variant B (CG7311), mRNA 
0   NM_135823.2  CG7311-RA, transcript variant A (CG7311), mRNA 

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