Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
11321R-2 |
Symbol |
CG11321 |
Full Name |
CG11321 |
CG No |
CG11321 |
Old CG No |
CG11321 |
Synonyms |
CG11321 |
Accession No (Link to NCBI) |
NM_135228.1 |
Inserted Chr. |
X |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTACCGCCAACAGAAGGCTCGC |
Primer Seq. 3' |
aatctagaggtaccGCAGCTCTGGAGGCAGCTGAA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TACCGCCAAC AGAAGGCTCG CCAGGATCTG AGCGCCAACA GCGAACAGGC GGCCGGCGcC
0061 CAGCGGCGAC AGATGAGCAC ATCGGTGTTC AATCTCAACT CGAATCCACG TCGACCAACT
0121 GTCCGAGGCC CAAAACGGAG GTGCCTGGCN TCGCCAATCA GCGCATCCAG CAGGCCCAAT
0181 TCCCTGGCGC AGCTAAACTG CGCTGGATGT CAACAGAGTC AGCAGCATCC TGGCTGGGCA
0241 NCAgCATCCG CACCAAGCAC TTCCTCAGCA CCAGCATCCC GATCAGTGGT CACAGTTCGG
0301 CTCCCAACAG CAATTCAACA ACTCCAATCT GTCCCTGAAC GTTGGACCGG GTTACATGTC
0361 GCAGCAACAT CATCCACACT ATCCGCCACC AGTGTTTATG ACCCAGCGTG GTATGATGCC
0421 CAATGTGTAT CCAGGAGCAC CAGGCTATCC CATGATGCAT CCAGGTGTCA TGGGAATGCC
0481 ACCTTCAGCT GCCTCCAGAG CTGC |
in silico PCR Fragment |
0001 TACCGCCAAC AGAAGGCTCG CCAGGATCTG AGCGCCAACA GCGAACAGGC GGCCGGCGCC
0061 CAGCGGCGAC AGATGAGCAC ATCGGTGTTC AATCTCAACT CGAATCCACG TCGACC-ACT
0121 GTCCGAGGCC CAAAACGGAG GTGCCTGGC- TCGCCAATCA GCGCATCCAG CAGGCCCAA-
0181 TCCCTGGCGC AGCTAAACTG CGCTGGATGT CAACAGAGTC AGCAGCATCC TGGCTGGGCA
0241 -CAGCATCCG CACCAAGCAC TTCCTCAGCA CCAGCATCCC GATCAGTGGT CACAGTTCGG
0301 CTCCCAACAG CAATTCAACA ACTCCAATCT GTCCCTGAAC GTTGGACCGG GTTACATGTC
0361 GCAGCAACAT CATCCACACT ATCCGCCACC AGTGTTTATG ACCCAGCGTG GTATGATGCC
0421 CAATGTGTAT CCAGGAGCAC CAGGCTATCC CATGATGCAT CCAGGTGTCA TGGGAATGCC
0481 ACCTTCAGCT GCCTCCAGAG CTGC |
Assemble Data |
11321R-2.IR_full 1 TACCGCCAACAGAAGGCTCGCCAGGATCTGAGCGCCAACAGCGAACAGGCGGCCGGCGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 1 TACCGCCAACAGAAGGCTCGCCAGGATCTGAGCGCCAACAGCGAACAGGCGGCCGGCGCC 60
11321R-2.IR_full 61 CAGCGGCGACAGATGAGCACATCGGTGTTCAATCTCAACTCGAATCCACGTCGACCAACT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
11321R-2.in silico 61 CAGCGGCGACAGATGAGCACATCGGTGTTCAATCTCAACTCGAATCCACGTCGACC-ACT 120
11321R-2.IR_full 121 GTCCGAGGCCCAAAACGGAGGTGCCTGGCNTCGCCAATCAGCGCATCCAGCAGGCCCAAT 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
11321R-2.in silico 121 GTCCGAGGCCCAAAACGGAGGTGCCTGGC-TCGCCAATCAGCGCATCCAGCAGGCCCAA- 180
11321R-2.IR_full 181 TCCCTGGCGCAGCTAAACTGCGCTGGATGTCAACAGAGTCAGCAGCATCCTGGCTGGGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 181 TCCCTGGCGCAGCTAAACTGCGCTGGATGTCAACAGAGTCAGCAGCATCCTGGCTGGGCA 240
11321R-2.IR_full 241 CAGCATCCGCACCAAGCACTTCCTCAGCACCAGCATCCCGATCAGTGGTCACAGTTCGG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 241 CAGCATCCGCACCAAGCACTTCCTCAGCACCAGCATCCCGATCAGTGGTCACAGTTCGG 299
11321R-2.IR_full 301 CTCCCAACAGCAATTCAACAACTCCAATCTGTCCCTGAACGTTGGACCGGGTTACATGTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 301 CTCCCAACAGCAATTCAACAACTCCAATCTGTCCCTGAACGTTGGACCGGGTTACATGTC 359
11321R-2.IR_full 361 GCAGCAACATCATCCACACTATCCGCCACCAGTGTTTATGACCCAGCGTGGTATGATGCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 361 GCAGCAACATCATCCACACTATCCGCCACCAGTGTTTATGACCCAGCGTGGTATGATGCC 419
11321R-2.IR_full 421 CAATGTGTATCCAGGAGCACCAGGCTATCCCATGATGCATCCAGGTGTCATGGGAATGCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11321R-2.in silico 421 CAATGTGTATCCAGGAGCACCAGGCTATCCCATGATGCATCCAGGTGTCATGGGAATGCC 479
11321R-2.IR_full 481 ACCTTCAGCTGCCTCCAGAGCTGC 503
||||||||||||||||||||||||
11321R-2.in silico 481 ACCTTCAGCTGCCTCCAGAGCTGC 503
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_135228.1 |
CG11321-RA, transcript variant A (CG11321), mRNA |
97.09 |
468 |
2 |
2 |
2 |
NM_164709.1 |
CG11321-RB, transcript variant B (CG11321), mRNA |
0 |
0 |
4 |
3 |
4 |
NM_137193.1 |
CG12959-RA (CG12959), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_206332.1 |
CG18331-RA (CG18331), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_166983.1 |
CG13316-RA, transcript variant A (Mnt), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_166984.1 |
CG13316-RC, transcript variant C (Mnt), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_137721.1 |
CG18375-RA, transcript variant A (CG18375), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_176243.1 |
CG18375-RB, transcript variant B (CG18375), mRNA |
0 |
0 |
1 |
3 |
9 |
NM_140328.4 |
CG10686-RA (tral), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_136247.2 |
CG9252-RA (CG9252), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_001014681.1 |
CG33553-RD, transcript variant D (Doa), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_001043298.1 |
CG33553-RH, transcript variant H (Doa), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_135766.2 |
CG16974-RA (CG16974), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_136737.1 |
CG12898-RA (CG12898), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001032052.1 |
CG33715-RE, transcript variant E (Msp-300), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_057938.3 |
CG3093-RA (dor), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_080033.2 |
CG1624-RC, transcript variant C (dpld), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_165534.1 |
CG1624-RB, transcript variant B (dpld), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_165533.1 |
CG1624-RA, transcript variant A (dpld), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_143213.2 |
CG12290-RA (CG12290), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_143376.1 |
CG12558-RA (CG12558), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_140690.2 |
CG7729-RA (Fit2), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079985.2 |
CG5206-RA (bon), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_165952.1 |
CG30488-RA (CG30488), mRNA |
0 |
0 |
0 |
6 |
6 |
NM_139371.1 |
CG13917-RA (CG13917), mRNA |
0 |
0 |
0 |
5 |
10 |
NM_143360.2 |
CG1345-RA (Gfat2), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_167164.2 |
CG12737-RB, transcript variant B (Crag), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_080341.2 |
CG12737-RA, transcript variant A (Crag), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_139541.1 |
CG12017-RA (CG12017), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_141014.1 |
CG10588-RA (CG10588), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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DB |
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+- |
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DC |
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++ |
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DM |
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+- |
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VM |
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VB |
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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