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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11314R-1 
 Symbol CG11314  Full Name CG11314 
 CG No CG11314  Old CG No CG11314 
 Synonyms BcDNA:RE56164, CG11314 
 Accession No (Link to NCBI) NM_143566.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees larval lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATGTTGCGTCCTAGCTCGCTG 
 Primer Seq. 3' 
aatctagaggtaccTTCTGGGAGACGGGATCCTTC 
 Predicted Fragment Size 
440 
 IR fragment full Seq 
0001 ATGTTGCGTC CTAGCTCGCT NGCAGGCTGT CGCCATCGCC ATCGTCCTGA TTCTCGGCAT 
0061 CCGCTTCCGC CGAGGTGGTC AACTTCGAAC CATGTCCGGA TAGCGTAGAC ACCTGTACGA 
0121 TCCAGCAGGT GAGAGTCTCG CCATGTCCGG AGGCCCTCAA CAATGCGGCT TGCAATATCC 
0181 GCCGGAAGCA CAACAGTGAG ATGAGCTTCG ACTTCACGCC GAACTTCGAT GCCGACACCC 
0241 TGGTAGCCAG CTTGGGCTGG GCCAAGAGCG AGAATGTGGA GCTGCCCCTG CTCACCTTGG 
0301 ACAGCGCCGC CTGCAAGTAC ACACCCTGCC CCGTGAGATC CGGAGTGAAA CAGACCTACA 
0361 CCACCCTGGT GCCCATCGAG GCCAAGTTTC CCCTGAGTCC GTACACCATC CGTTGGGCTC 
0421 TGAAGGATCC CGTCTCCCAG AA 
 in silico PCR Fragment 
0001 ATGTTGCGTC CTAGCTCGCT -GCAGGCTGT CGCCATCGCC ATCGTCCTGA -TCTCGTCAT 
0061 CCGCTTCCGC CGAGGTGGTC AACTTCGAAC CATGTCCGGA TAGCGTAGAC ACCTGTACGA 
0121 TCCAGCAGGT GAGAGTCTCG CCATGTCCGG AGGCCCTCAA CAATGCGGCT TGCAATATCC 
0181 GCCGGAAGCA CAACAGTGAG ATGAGCTTCG ACTTCACGCC GAACTTCGAT GCCGACACCC 
0241 TGGTAGCCAG CTTGGGCTGG GCCAAGAGCG AGAATGTGGA GCTGCCCCTG CTCACCTTGG 
0301 ACAGCGCCGC CTGCAAGTAC ACACCCTGCC CCGTGAGATC CGGAGTGAAA CAGACCTACA 
0361 CCACCCTGGT GCCCATCGAG GCCAAGTTTC CCCTGAGTCC GTACACCATC CGTTGGGCTC 
0421 TGAAGGATCC CGTCTCCCAG AA 
 Assemble Data 

11314R-1.IR_full       1   ATGTTGCGTCCTAGCTCGCTNGCAGGCTGTCGCCATCGCCATCGTCCTGATTCTCGGCAT 60
                           |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
11314R-1.in silico     1   ATGTTGCGTCCTAGCTCGCT-GCAGGCTGTCGCCATCGCCATCGTCCTGA-TCTCGTCAT 60


11314R-1.IR_full       61  CCGCTTCCGCCGAGGTGGTCAACTTCGAACCATGTCCGGATAGCGTAGACACCTGTACGA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     61  CCGCTTCCGCCGAGGTGGTCAACTTCGAACCATGTCCGGATAGCGTAGACACCTGTACGA 120


11314R-1.IR_full       121 TCCAGCAGGTGAGAGTCTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     121 TCCAGCAGGTGAGAGTCTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCC 180


11314R-1.IR_full       181 GCCGGAAGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGACACCC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     181 GCCGGAAGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGACACCC 240


11314R-1.IR_full       241 TGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCCCCTGCTCACCTTGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     241 TGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCCCCTGCTCACCTTGG 300


11314R-1.IR_full       301 ACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGAGATCCGGAGTGAAACAGACCTACA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     301 ACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGAGATCCGGAGTGAAACAGACCTACA 360


11314R-1.IR_full       361 CCACCCTGGTGCCCATCGAGGCCAAGTTTCCCCTGAGTCCGTACACCATCCGTTGGGCTC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11314R-1.in silico     361 CCACCCTGGTGCCCATCGAGGCCAAGTTTCCCCTGAGTCCGTACACCATCCGTTGGGCTC 420


11314R-1.IR_full       421 TGAAGGATCCCGTCTCCCAGAA 442
                           ||||||||||||||||||||||
11314R-1.in silico     421 TGAAGGATCCCGTCTCCCAGAA 442



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   422  0  0  0  NM_143566.1  CG11314-RA (CG11314), mRNA 
3.55   15  62  45  49  NM_143567.3  CG11315-RA, transcript variant A (CG11315), mRNA 
2.6   11  54  28  29  NM_170521.2  CG11315-RB, transcript variant B (CG11315), mRNA 
0.23   1  2  8  7  NM_144375.2  CG1652-RA (lectin-46Cb), mRNA 
0.23   1  2  2  5  NM_141316.1  CG1347-RA, transcript variant A (CG1347), mRNA 
0.23   1  2  2  5  NM_206434.1  CG1347-RB, transcript variant B (CG1347), mRNA 
0   0  4  4  2  NM_132811.2  CG7860-RA (CG7860), mRNA 
0   0  3  2  7  NM_058136.3  CG4376-RA, transcript variant A (Actn), mRNA 
0   0  3  2  7  NM_058137.3  CG4376-RC, transcript variant C (Actn), mRNA 
0   0  3  2  7  NM_166920.1  CG4376-RB, transcript variant B (Actn), mRNA 
0   0  3  2  4  NM_080306.2  CG3443-RB (pcx), mRNA 
0   0  2  5  9  NM_176449.1  CG33208-RH, transcript variant H (MICAL), mRNA 
0   0  2  5  9  NM_176448.1  CG33208-RG, transcript variant G (MICAL), mRNA 
0   0  2  5  9  NM_176446.1  CG33208-RD, transcript variant D (MICAL), mRNA 
0   0  2  5  9  NM_176444.1  CG33208-RB, transcript variant B (MICAL), mRNA 
0   0  2  5  9  NM_176447.1  CG33208-RF, transcript variant F (MICAL), mRNA 
0   0  2  5  9  NM_176445.1  CG33208-RC, transcript variant C (MICAL), mRNA 
0   0  2  5  7  NM_176443.1  CG33208-RE, transcript variant E (MICAL), mRNA 
0   0  2  5  5  NM_176450.1  CG33208-RA, transcript variant A (MICAL), mRNA 
0   0  2  4  2  NM_001014727.1  CG12154-RB, transcript variant B (oc), mRNA 
0   0  2  4  2  NM_078536.3  CG12154-RA, transcript variant A (oc), mRNA 
0   0  2  3  3  NM_142274.1  CG6901-RA (CG6901), mRNA 
0   0  2  2  3  NM_170229.2  CG5099-RB, transcript variant B (msi), mRNA 
0   0  2  2  3  NM_079838.2  CG5099-RA, transcript variant A (msi), mRNA 
0   0  2  2  2  NM_140827.1  CG18136-RA (CG18136), mRNA 
0   0  1  4  6  NM_001014561.1  CG7524-RD, transcript variant D (Src64B), mRNA 
0   0  1  4  6  NM_080195.2  CG7524-RB, transcript variant B (Src64B), mRNA 
0   0  1  4  4  NM_165889.1  CG30043-RA (CG30043), mRNA 
0   0  1  3  6  NM_135066.1  CG14035-RA (CG14035), mRNA 
0   0  1  3  5  NM_140588.1  CG13073-RB, transcript variant B (CG13073), mRNA 

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