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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11312R-1 
 Symbol insc  Full Name inscuteable 
 CG No CG11312  Old CG No CG11312 
 Synonyms Ins, nem, l(2)k12405, l(2)05475, 25/17, fam, CG11312, insc, Insc 
 Accession No (Link to NCBI) NM_057676.3 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCTTTCAGCGTAGCTACAGCA 
 Primer Seq. 3'
aatctagaggtaccATCCTCATCTCCCGACCTCGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCTTTCAGCG TAGCTACAGC AAGGTCTGGT GGGGATCCGA GCAGTCCTCC CTGACCAGCG 
0061 GCGGTTTCTA TTCGAGCTTC AGCGGCGGGA GCAGCANCAT CCAGCACATC CAACTACCCA 
0121 CAAAGACAGC CAGCATCCCT CGGCCCCCTG GGCAATCTGT CCTGCATCCA GGAGGTGGAG 
0181 GACGAGCAGA ACAGCTCCAA GCTATCCTGG CACAAGCACG ATAAGCCCCG GCAGTCTGCG 
0241 CAGTCAGGNA TTCGGGCTTC TCGGACAATG AGGAATCGCA TCAGTTGCAG CATCAGCAGA 
0301 ACTTATCCCC GCCATCGCCA CAATCCGATA AGCAGCAAAC GCCCGCGGCC ACGCCCACAT 
0361 CCGTACATTC GGTGGCCACG CCCCCAACTG TGGTGCGCCG AGTGGGCAAC TCGTCGTTCT 
0421 ACTCGCCGCT GATCAGTGTC ACGCGCCGAA TTTCCTTCAC CAGCGGCCAG ATTACGCCCA 
0481 AGACGAGGTC GGGAGATGAG GAT 
 in silico PCR Fragment
0001 CCTTTCAGCG TAGCTACAGC AAGGTCTGGT GGGGATCCGA GCAGTCCTCC CTGACCAGCG 
0061 GCGGTTTCTA TTCGAGCTTC AGCGGCGGGA GCAGCA-CAT CCAGCACATC CAACTACCCA 
0121 CAAAGACAGC CAGCATCCCT CGGCCCCCTG GGCAATCTGT CCTGCATCCA GGAGGTGGAG 
0181 GACGAGCAGA ACAGCTCCAA GCTATCCTGG CACAAGCACG AT-AGCCCCG GCAGTCTGCG 
0241 CAGTCAGG-A TTCGGGCTTC TCGGACAATG AGGAATCGCA TCAGTTGCAG CATCAGCAGA 
0301 ACTTATCCCC GCCATCGCCA CAATCCGATA AGCAGCAAAC GCCCGCGGCC ACGCCCACAT 
0361 CCGTACATTC GGTGGCCACG CCCCCAACTG TGGTGCGCCG AGTGGGCAAC TCGTCGTTCT 
0421 ACTCGCCGCT GATCAGTGTC ACGCGCCGAA TTTCCTTCAC CAGCGGCCAG ATTACGCCCA 
0481 AGACGAGGTC GGGAGATGAG GAT 
 Assemble Data

11312R-1.IR_full       1   CCTTTCAGCGTAGCTACAGCAAGGTCTGGTGGGGATCCGAGCAGTCCTCCCTGACCAGCG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     1   CCTTTCAGCGTAGCTACAGCAAGGTCTGGTGGGGATCCGAGCAGTCCTCCCTGACCAGCG 60


11312R-1.IR_full       61  GCGGTTTCTATTCGAGCTTCAGCGGCGGGAGCAGCANCATCCAGCACATCCAACTACCCA 120
                           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
11312R-1.in silico     61  GCGGTTTCTATTCGAGCTTCAGCGGCGGGAGCAGCA-CATCCAGCACATCCAACTACCCA 120


11312R-1.IR_full       121 CAAAGACAGCCAGCATCCCTCGGCCCCCTGGGCAATCTGTCCTGCATCCAGGAGGTGGAG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     121 CAAAGACAGCCAGCATCCCTCGGCCCCCTGGGCAATCTGTCCTGCATCCAGGAGGTGGAG 180


11312R-1.IR_full       181 GACGAGCAGAACAGCTCCAAGCTATCCTGGCACAAGCACGATAAGCCCCGGCAGTCTGCG 240
                           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
11312R-1.in silico     181 GACGAGCAGAACAGCTCCAAGCTATCCTGGCACAAGCACGAT-AGCCCCGGCAGTCTGCG 240


11312R-1.IR_full       241 CAGTCAGGNATTCGGGCTTCTCGGACAATGAGGAATCGCATCAGTTGCAGCATCAGCAGA 300
                           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     241 CAGTCAGG-ATTCGGGCTTCTCGGACAATGAGGAATCGCATCAGTTGCAGCATCAGCAGA 300


11312R-1.IR_full       301 ACTTATCCCCGCCATCGCCACAATCCGATAAGCAGCAAACGCCCGCGGCCACGCCCACAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     301 ACTTATCCCCGCCATCGCCACAATCCGATAAGCAGCAAACGCCCGCGGCCACGCCCACAT 360


11312R-1.IR_full       361 CCGTACATTCGGTGGCCACGCCCCCAACTGTGGTGCGCCGAGTGGGCAACTCGTCGTTCT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     361 CCGTACATTCGGTGGCCACGCCCCCAACTGTGGTGCGCCGAGTGGGCAACTCGTCGTTCT 420


11312R-1.IR_full       421 ACTCGCCGCTGATCAGTGTCACGCGCCGAATTTCCTTCACCAGCGGCCAGATTACGCCCA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11312R-1.in silico     421 ACTCGCCGCTGATCAGTGTCACGCGCCGAATTTCCTTCACCAGCGGCCAGATTACGCCCA 480


11312R-1.IR_full       481 AGACGAGGTCGGGAGATGAGGAT 503
                           |||||||||||||||||||||||
11312R-1.in silico     481 AGACGAGGTCGGGAGATGAGGAT 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_057676.3  CG11312-RA (insc), mRNA 
0.41   NM_135019.1  CG15627-RA (CG15627), mRNA 
0   NM_142444.1  CG18599-RA (CG18599), mRNA 
0   NM_132009.2  CG11473-RA (CG11473), mRNA 
0   NM_165838.2  CG17835-RC, transcript variant C (inv), mRNA 
0   NM_078975.3  CG17835-RB, transcript variant B (inv), mRNA 
0   NM_165837.2  CG17835-RA, transcript variant A (inv), mRNA 
0   NM_165839.2  CG17835-RD, transcript variant D (inv), mRNA 
0   NM_136788.1  CG12944-RA, transcript variant A (Obp47a), mRNA 
0   NM_206088.1  CG12944-RB, transcript variant B (Obp47a), mRNA 
0   NM_001042895.1  CG31731-RB, transcript variant B (CG31731), mRNA 
0   NM_165058.3  CG31731-RA, transcript variant A (CG31731), mRNA 
0   NM_134718.4  CG31795-RA, transcript variant A (ia2), mRNA 
0   NM_164401.3  CG31795-RB, transcript variant B (ia2), mRNA 
0   11  NM_135708.1  CG17211-RA (CG17211), mRNA 
0   NM_078600.2  CG10521-RA (NetB), mRNA 
0   NM_170467.1  CG31025-RB, transcript variant B (CG31025), mRNA 
0   NM_170466.1  CG31025-RA, transcript variant A (CG31025), mRNA 
0   17  NM_078516.2  CG12690-RA (CHES-1-like), mRNA 
0   NM_132858.2  CG9056-RA (CG9056), mRNA 
0   NM_169370.2  CG6584-RB, transcript variant B (SelR), mRNA 
0   NM_141773.2  CG6584-RA, transcript variant A (SelR), mRNA 
0   NM_206473.1  CG6584-RF, transcript variant F (SelR), mRNA 
0   NM_169371.1  CG6584-RD, transcript variant D (SelR), mRNA 
0   NM_169369.1  CG6584-RE, transcript variant E (SelR), mRNA 
0   NM_169368.1  CG6584-RC, transcript variant C (SelR), mRNA 
0   NM_078723.2  CG3022-RA, transcript variant A (GABA-B-R3), mRNA 
0   NM_176603.1  CG31000-RH, transcript variant H (heph), mRNA 
0   21  NM_143409.1  CG11873-RA (CG11873), mRNA 
0   NM_140041.2  CG4432-RB, transcript variant B (PGRP-LC), mRNA 

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