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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
10948R-1 |
| Symbol |
CG10948 |
Full Name |
CG10948 |
| CG No |
CG10948 |
Old CG No |
CG10948 |
| Synonyms |
CT30663, cg10948, CG10948 |
| Accession No (Link to NCBI) |
NM_168525.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Kamimura K, Koyama T, Habuchi H, Ueda R, Masu M, Kimata K, Nakato H.
Specific and flexible roles of heparan sulfate modifications in Drosophila FGF signaling.
J Cell Biol (2006) 174(6) 773-8
[
PubMed ID = 16966419
]
[
RRC reference
]
Kobayashi M, Michaut L, Ino A, Honjo K, Nakajima T, Maruyama Y, Mochizuki H, Ando M, Ghangrekar I, Takahashi K, Saigo K, Ueda R, Gehring WJ, Furukubo-Tokunaga K.
Differential microarray analysis of Drosophila mushroom body transcripts using chemical ablation.
Proc Natl Acad Sci U S A (2006) 103(39) 14417-22
[
PubMed ID = 16971484
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCAACAACAACCACAGGGCAGT |
| Primer Seq. 3' |
aatctagaggtaccGGTGCGTTCGGATTAGGTGGA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CAACAACAAN CCACAGGGCA GTGCGCCCAT GGATCTGGAG AATGAGAACG AACACTCTGC
0061 GGATGTGAGC TCCTCGACGA TGCACAAGGA ACCCAAGTTG CAGGCCACAT CCAACTCGCT
0121 CACTCTGCCC GATTCGACGC AACTATACCT GAATGGCTTG GTGCACACAC CACCTGGATA
0181 TCTGTATTTT CCGGCCACCC AAGCGGGNGG TGCTNACTGC ACCCGGCAAT CCATCCTCGG
0241 CTGCAGGGGG ATCCACGCCG GCAGCTTCAG CAAACAGCAC CGCCAATGCG CAAATGCTTA
0301 TGGATCCTAC GGCCATGATG GCGGCGGCNG ATGCAACAAA TGCAACAGAT GCACTATGCA
0361 GCGGCAGCAG CAGCCGGGAA TGACCACAGA AACCGGAGCT GGACTAGAAG CAACTCTTAA
0421 TGCGGATGGC GTTACACCAG CTGGCCTCAA GGAGGTGATC AAGACCAAGA ACTGCATCCT
0481 GTTTCCACCT AATCCGAACG CACC |
| in silico PCR Fragment |
0001 CAACAACAA- CCACAGGGCA GTGCGCCCAT GGATCTGGAG AATGAGAACG AACACTCTGC
0061 GGATGTGAGC TCCTCGACGA TGCACAAGGA ACCCAAGTTG CAGGCCACAT CCAACTCGCT
0121 CACTCTGCCC GATTCGACGC AACTATACCT GAATGGCTTG GTGCACACAC CACCTGGATA
0181 TCTGTATTTT CCGGCCACCC AAGCGGGTGG TGCT-ACTGC ACCCGGCAAT CCATCCTCGG
0241 CTGCAGGGGG ATCCACGCCG GCAGCTTCAG CAAACAGCAC CGCCAATGCG CAAATGCTCA
0301 TGGATCCTAC GGCCATGATG GCGGCGGC-G ATGCAACAAA TGCAACAGAT GCACTATGCA
0361 GCGGCAGCAG CAGCC-GGAA TGACCACAGA AACCGGAGCT GGACTAGAAG CAACTCTTAA
0421 TGCGGATGGC GTTACACCAG CTGGCCTCAA GGAGGTGATC AAGACCAAGA ACTGCATCCT
0481 GTTTCCACCT AATCCGAACG CACC |
| Assemble Data |
10948R-1.IR_full 1 CAACAACAANCCACAGGGCAGTGCGCCCATGGATCTGGAGAATGAGAACGAACACTCTGC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
10948R-1.in silico 1 CAACAACAA-CCACAGGGCAGTGCGCCCATGGATCTGGAGAATGAGAACGAACACTCTGC 60
10948R-1.IR_full 61 GGATGTGAGCTCCTCGACGATGCACAAGGAACCCAAGTTGCAGGCCACATCCAACTCGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10948R-1.in silico 61 GGATGTGAGCTCCTCGACGATGCACAAGGAACCCAAGTTGCAGGCCACATCCAACTCGCT 120
10948R-1.IR_full 121 CACTCTGCCCGATTCGACGCAACTATACCTGAATGGCTTGGTGCACACACCACCTGGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10948R-1.in silico 121 CACTCTGCCCGATTCGACGCAACTATACCTGAATGGCTTGGTGCACACACCACCTGGATA 180
10948R-1.IR_full 181 TCTGTATTTTCCGGCCACCCAAGCGGGNGGTGCTNACTGCACCCGGCAATCCATCCTCGG 240
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
10948R-1.in silico 181 TCTGTATTTTCCGGCCACCCAAGCGGGTGGTGCT-ACTGCACCCGGCAATCCATCCTCGG 240
10948R-1.IR_full 241 CTGCAGGGGGATCCACGCCGGCAGCTTCAGCAAACAGCACCGCCAATGCGCAAATGCTTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
10948R-1.in silico 241 CTGCAGGGGGATCCACGCCGGCAGCTTCAGCAAACAGCACCGCCAATGCGCAAATGCTCA 300
10948R-1.IR_full 301 TGGATCCTACGGCCATGATGGCGGCGGCNGATGCAACAAATGCAACAGATGCACTATGCA 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
10948R-1.in silico 301 TGGATCCTACGGCCATGATGGCGGCGGC-GATGCAACAAATGCAACAGATGCACTATGCA 360
10948R-1.IR_full 361 GCGGCAGCAGCAGCCGGGAATGACCACAGAAACCGGAGCTGGACTAGAAGCAACTCTTAA 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
10948R-1.in silico 361 GCGGCAGCAGCAGCC-GGAATGACCACAGAAACCGGAGCTGGACTAGAAGCAACTCTTAA 420
10948R-1.IR_full 421 TGCGGATGGCGTTACACCAGCTGGCCTCAAGGAGGTGATCAAGACCAAGAACTGCATCCT 480
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10948R-1.in silico 421 TGCGGATGGCGTTACACCAGCTGGCCTCAAGGAGGTGATCAAGACCAAGAACTGCATCCT 480
10948R-1.IR_full 481 GTTTCCACCTAATCCGAACGCACC 504
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10948R-1.in silico 481 GTTTCCACCTAATCCGAACGCACC 504
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_140349.2 |
CG10948-RB, transcript variant B (CG10948), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_168524.1 |
CG10948-RC, transcript variant C (CG10948), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_168525.1 |
CG10948-RA, transcript variant A (CG10948), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_079990.2 |
CG15667-RA, transcript variant A (Sara), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_166451.1 |
CG15667-RB, transcript variant B (Sara), mRNA |
| 0 |
0 |
4 |
12 |
55 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
| 0 |
0 |
4 |
12 |
55 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
| 0 |
0 |
4 |
12 |
55 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
| 0 |
0 |
4 |
10 |
35 |
NM_169260.1 |
CG9755-RB, transcript variant B (pum), mRNA |
| 0 |
0 |
4 |
10 |
33 |
NM_176427.1 |
CG9755-RE, transcript variant E (pum), mRNA |
| 0 |
0 |
4 |
7 |
8 |
NM_170247.1 |
CG17367-RC, transcript variant C (Lnk), mRNA |
| 0 |
0 |
4 |
7 |
8 |
NM_143181.2 |
CG17367-RB, transcript variant B (Lnk), mRNA |
| 0 |
0 |
4 |
7 |
8 |
NM_170246.1 |
CG17367-RA, transcript variant A (Lnk), mRNA |
| 0 |
0 |
4 |
3 |
16 |
NM_132522.2 |
CG32662-RA (CG32662), mRNA |
| 0 |
0 |
3 |
31 |
259 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 0 |
0 |
3 |
31 |
259 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 0 |
0 |
3 |
31 |
259 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 0 |
0 |
3 |
20 |
58 |
NM_079996.2 |
CG18024-RA (SoxN), mRNA |
| 0 |
0 |
3 |
5 |
29 |
NM_167356.1 |
CG1770-RB, transcript variant B (HDAC4), mRNA |
| 0 |
0 |
3 |
5 |
29 |
NM_001014736.1 |
CG1770-RC, transcript variant C (HDAC4), mRNA |
| 0 |
0 |
3 |
5 |
29 |
NM_132640.2 |
CG1770-RA, transcript variant A (HDAC4), mRNA |
| 0 |
0 |
3 |
5 |
5 |
NM_133114.2 |
CG32541-RA (CG32541), mRNA |
| 0 |
0 |
3 |
4 |
25 |
NM_206506.1 |
CG7467-RC, transcript variant C (osa), mRNA |
| 0 |
0 |
3 |
4 |
25 |
NM_079668.2 |
CG7467-RB, transcript variant B (osa), mRNA |
| 0 |
0 |
3 |
4 |
25 |
NM_169775.1 |
CG7467-RA, transcript variant A (osa), mRNA |
| 0 |
0 |
3 |
4 |
10 |
NM_057214.3 |
CG4807-RA, transcript variant A (ab), mRNA |
| 0 |
0 |
3 |
4 |
10 |
NM_057215.3 |
CG4807-RB, transcript variant B (ab), mRNA |
| 0 |
0 |
3 |
3 |
7 |
NM_165853.1 |
CG13188-RA, transcript variant A (CG13188), mRNA |
| 0 |
0 |
3 |
3 |
6 |
NM_136909.2 |
CG13167-RA (CG13167), mRNA |
| 0 |
0 |
2 |
12 |
20 |
NM_136672.2 |
CG1688-RA (CG1688), mRNA |
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