National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10939R-3 
 Symbol Sip1  Full Name SRY interacting protein 1 
 CG No CG10939  Old CG No CG10939 
 Synonyms CG10939, l(2)06373, Sip1 
 Accession No (Link to NCBI) NM_079973.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGAATGAAGTCCGCTTGCTGCT 
 Primer Seq. 3' 
aatctagaggtaccAATGCAAGGTGCCCGCCTTAT 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GAATGAAGTC CGCTTGCTGC TCATCGATGT GGAHGGCAAG GCCTTGGAGG TGAAACCAGC 
0061 ATCTCCGCCA GCCGCTGCGT GCAATGGAAA CGGTAGTGCC AGTCAGAATG GATACGAGGG 
0121 CACTAAACAG GAGATGCCCG GAGCAAGTGC CAATATCAGT AGCATCAGTA TGGTGAGCAC 
0181 CAAGCGATCC TCAAATGCCA GCAGCATTCA GAGCGGCAGT ACCATGAATG CCTCCGATTT 
0241 GGATGTGGTC GATAGGGGAA TACCGGCAGT CGCTGCTCCG GTGGCTATCA CCCCGCCTCC 
0301 CGTTCAAAAT GGAAGTAAAC CCTCATCGCC GATTAATAAT AACACTTTGA TGAGCACACC 
0361 GCCACCGCCG TCCGCTACTA AGGCTGGCAT CAACAACAAT GGCAGTGTTT ATAACACCAA 
0421 TGGAAATGGT ACAAATGGCA TGACCACACC CACTACACCA CCCCCACCGA CCAGTGGCTA 
0481 TAAGGCGGGC ACCTTGCATT  
 in silico PCR Fragment 
0001 GAATGAAGTC CGCTTGCTGC TCATCGATGT GGATGGCAAG GCCTTGGAGG TGAAACCGGC 
0061 ATCTCCGCCA GCCGCTGCGT GCAATGGAAA CGGTAGTGCC AGTCAGAATG GATACGAGGG 
0121 CACCAAACAG GAGATGCCCG GAGCAAGTGC CAATATCAGT AGCATCAGTA TGGTGAGCAC 
0181 CAAGCGATCC TCAAATGCCA GCAGCATTCA GAGCGGCAGT ACCATGAATG CCTCCGATTT 
0241 GGATGTGGTC GATAGGGGAA TACCGGCAGT CGCTGCTCCG GTGGCTATCA CCCCGCCTCC 
0301 CGTTCAAAAT GGAAGTAAAC CCTCATCGCC GATTAATAAT AACACTTTGA TGAGCACACC 
0361 GCCACCGCCG TCCGCTACTA AGGCTGGCAT CAACAACAAT GGCAGTGTTT ATAACACCAA 
0421 TGGAAATGGT ACAAATGGCA TGACCACACC CACTACACCA CCCCCACCGA CCAGTGGCTA 
0481 TAAGGCGGGC ACCTTGCATT  
 Assemble Data 

10939R-3.IR_full       1   GAATGAAGTCCGCTTGCTGCTCATCGATGTGGAHGGCAAGGCCTTGGAGGTGAAACCAGC 60
                           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
10939R-3.in silico     1   GAATGAAGTCCGCTTGCTGCTCATCGATGTGGATGGCAAGGCCTTGGAGGTGAAACCGGC 60


10939R-3.IR_full       61  ATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTGCCAGTCAGAATGGATACGAGGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     61  ATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTGCCAGTCAGAATGGATACGAGGG 120


10939R-3.IR_full       121 CACTAAACAGGAGATGCCCGGAGCAAGTGCCAATATCAGTAGCATCAGTATGGTGAGCAC 180
                           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     121 CACCAAACAGGAGATGCCCGGAGCAAGTGCCAATATCAGTAGCATCAGTATGGTGAGCAC 180


10939R-3.IR_full       181 CAAGCGATCCTCAAATGCCAGCAGCATTCAGAGCGGCAGTACCATGAATGCCTCCGATTT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     181 CAAGCGATCCTCAAATGCCAGCAGCATTCAGAGCGGCAGTACCATGAATGCCTCCGATTT 240


10939R-3.IR_full       241 GGATGTGGTCGATAGGGGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCTCC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     241 GGATGTGGTCGATAGGGGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCTCC 300


10939R-3.IR_full       301 CGTTCAAAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTTGATGAGCACACC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     301 CGTTCAAAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTTGATGAGCACACC 360


10939R-3.IR_full       361 GCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACAATGGCAGTGTTTATAACACCAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     361 GCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACAATGGCAGTGTTTATAACACCAA 420


10939R-3.IR_full       421 TGGAAATGGTACAAATGGCATGACCACACCCACTACACCACCCCCACCGACCAGTGGCTA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10939R-3.in silico     421 TGGAAATGGTACAAATGGCATGACCACACCCACTACACCACCCCCACCGACCAGTGGCTA 480


10939R-3.IR_full       481 TAAGGCGGGCACCTTGCATT 500
                           ||||||||||||||||||||
10939R-3.in silico     481 TAAGGCGGGCACCTTGCATT 500



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_079973.2  CG10939-RA (Sip1), mRNA 
0   0  5  2  3  NM_140430.2  CG6603-RA, transcript variant A (Hsc70Cb), mRNA 
0   0  5  2  3  NM_168573.1  CG6603-RB, transcript variant B (Hsc70Cb), mRNA 
0   0  5  2  3  NM_168574.1  CG6603-RC, transcript variant C (Hsc70Cb), mRNA 
0   0  3  3  3  NM_078662.2  CG5488-RA (B-H2), mRNA 
0   0  3  2  5  NM_058091.3  CG3152-RA (Trap1), mRNA 
0   0  3  2  2  NM_138251.2  CG2277-RA (CG2277), mRNA 
0   0  2  3  4  NM_132415.1  CG9806-RA (CG9806), mRNA 
0   0  2  3  2  NM_132266.1  CG12081-RA (CG12081), mRNA 
0   0  2  2  7  NM_164569.2  CG31774-RA (fred), mRNA 
0   0  2  2  7  NM_132370.1  CG2989-RA (CG2989), mRNA 
0   0  1  6  6  NM_165287.1  CG15825-RA, transcript variant A (CG15825), mRNA 
0   0  1  6  6  NM_136115.2  CG15825-RB, transcript variant B (CG15825), mRNA 
0   0  1  4  7  NM_138163.1  CG7036-RA, transcript variant A (rno), mRNA 
0   0  1  4  7  NM_206222.1  CG7036-RB, transcript variant B (rno), mRNA 
0   0  1  4  5  NM_134552.3  CG1412-RA (RhoGAP19D), mRNA 
0   0  1  3  5  NM_142391.3  CG7660-RB, transcript variant B (pxt), mRNA 
0   0  1  3  5  NM_169776.1  CG7660-RA, transcript variant A (pxt), mRNA 
0   0  1  3  4  NM_001038944.1  CG8567-RB, transcript variant B (Deaf1), mRNA 
0   0  1  3  4  NM_079445.2  CG8567-RA, transcript variant A (Deaf1), mRNA 
0   0  1  3  2  NM_166013.1  CG30485-RA (CG30485), mRNA 
0   0  1  2  12  NM_167189.2  CG32705-RA (CG32705), mRNA 
0   0  1  2  3  NM_080368.2  CG9428-RA (ZIP1), mRNA 
0   0  1  2  2  NM_135795.1  CG9395-RA (CG9395), mRNA 
0   0  0  8  2  NM_165195.2  CG31991-RC, transcript variant C (mdy), mRNA 
0   0  0  8  2  NM_135969.3  CG31991-RA, transcript variant A (mdy), mRNA 
0   0  0  8  2  NM_165194.2  CG31991-RB, transcript variant B (mdy), mRNA 
0   0  0  8  2  NM_206002.1  CG31991-RD, transcript variant D (mdy), mRNA 
0   0  0  6  3  NM_142370.1  CG5873-RA (CG5873), mRNA 
0   0  0  6  2  NM_167259.1  CG1615-RA, transcript variant A (Ork1), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.