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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1089R-2 
 Symbol alpha-Est5  Full Name alpha-Esterase-5 
 CG No CG1089  Old CG No CG1089 
 Synonyms alphaE5, aE5, D, unnamed, CG1089, alpha-Est5 
 Accession No (Link to NCBI) NM_079541.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCAAAGGAAAGCAGCCTGGAAA 
 Primer Seq. 3'
aatctagaggtaccTTGGTCCTTGAGTCCTGCGTT 
 Predicted Fragment Size
489 
 IR fragment full Seq
0001 AGCAGCCTGG AAACTTGCGA ACTTACTCTG CCCGTGGGCC AAATTAAGGG CGTCAAACGC 
0061 CTTAGTCTTT ACGACGATCC CTACTTCAGC TTCGAGAAGA TCCCCTTTGC GCAAGccCCC 
0121 GTTGGGAGAA CTGAGATTTA GGGCCCCCGT GCCAGCAGAT CCGTGGAGCG GCGTTCTGGA 
0181 CTGCACCCAC TATGCAGAGA AGCCAACCCA GAGGGGCTTA CTGACCCGTG AAATCGAAGG 
0241 CGGCGAGGAT TGTCTGTATC TGAACGTCTA TTCCAAGCAG CTGAAAAGTG AGAAGCCATT 
0301 GCCGGTGATG GTGTACATTT ATGGCGGGGC CTTCACCGTA GGAGAGGCCA CCCGCGAATT 
0361 GTACGGCCCG GACTATTTTA TGACCAAAGA TGTTGTTCTT GTGACGCTTA ACTATCGCGT 
0421 GGATTGTTTG GGATTCCTAT CGCTCAAGGA CCCGAGTCTG AAAGTTCCCG GAAACGCAGG 
0481 ACTCAAGGAC CAA 
 in silico PCR Fragment
0001 AGC---CTGG AAACTTGCGA ACTTACTCTG CCCGTGGGCC AAATTAAGGG CGTCAAACGC 
0061 CTTAGTCTTT ACGACGATCC CTACTTCAGC TTCGAGAAGA TCCCCTTTGC G-AAGCCCCC 
0121 GTTGGGAGAA CTGAGATTTA GGGCCCCCGT GCCAGCAGAT CCGTGGAGCG GCGTTCTGGA 
0181 CTGCACCCAC TATGCAGAGA AGCCAACCCA GAGGGGCTTA CTGACCCGTG AAATCGAAGG 
0241 CGGCGAGGAT TGTCTGTATC TGAACGTCTA TTCCAAGCAG CTGAAAAGTG AGAAGCCATT 
0301 GCCGGTGATG GTGTACATTT ATGGCGGGGC CTTCACCGTA GGAGAGGCCA CCCGCGAATT 
0361 GTACGGCCCG GACTATTTTA TGACCAAAGA TGTTGTTCTT GTGACGCTTA ACTATCGCGT 
0421 GGATTGTTTG GGATTCCTAT CGCTCAAGGA CCCGAGTCTG AAAGTTCCCG GAAACGCAGG 
0481 ACTCAAGGAC CAA 
 Assemble Data

1089R-2.IR_full       1   AGCAGCCTGGAAACTTGCGAACTTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGC 60
                          |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     1   AGC---CTGGAAACTTGCGAACTTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGC 60


1089R-2.IR_full       61  CTTAGTCTTTACGACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGCAAGCCCCC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
1089R-2.in silico     61  CTTAGTCTTTACGACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCG-AAGCCCCC 120


1089R-2.IR_full       121 GTTGGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCGTTCTGGA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     121 GTTGGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCGTTCTGGA 180


1089R-2.IR_full       181 CTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTGACCCGTGAAATCGAAGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     181 CTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTGACCCGTGAAATCGAAGG 240


1089R-2.IR_full       241 CGGCGAGGATTGTCTGTATCTGAACGTCTATTCCAAGCAGCTGAAAAGTGAGAAGCCATT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     241 CGGCGAGGATTGTCTGTATCTGAACGTCTATTCCAAGCAGCTGAAAAGTGAGAAGCCATT 300


1089R-2.IR_full       301 GCCGGTGATGGTGTACATTTATGGCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     301 GCCGGTGATGGTGTACATTTATGGCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATT 360


1089R-2.IR_full       361 GTACGGCCCGGACTATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     361 GTACGGCCCGGACTATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGT 420


1089R-2.IR_full       421 GGATTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAAACGCAGG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1089R-2.in silico     421 GGATTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAAACGCAGG 480


1089R-2.IR_full       481 ACTCAAGGACCAA 493
                          |||||||||||||
1089R-2.in silico     481 ACTCAAGGACCAA 493

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   471  NM_079541.2  CG1089-RA (alpha-Est5), mRNA 
0.21   13  NM_135401.1  CG9289-RA (CG9289), mRNA 
0   19  21  NM_079533.2  CG1131-RA (alpha-Est10), mRNA 
0   11  14  NM_079543.2  CG1257-RA (alpha-Est3), mRNA 
0   NM_080331.2  CG3578-RA (bi), mRNA 
0   21  27  NM_079545.2  CG1031-RA (alpha-Est1), mRNA 
0   31  NM_079537.2  CG1112-RA, transcript variant A (alpha-Est7), mRNA 
0   21  NM_169188.1  CG1112-RB, transcript variant B (alpha-Est7), mRNA 
0   NM_130502.2  CG12311-RA (Pomt2), mRNA 
0   NM_138220.1  CG13889-RA (CG13889), mRNA 
0   NM_137809.1  CG3292-RA (CG3292), mRNA 
0   NM_135790.2  CG31729-RB, transcript variant B (CG31729), mRNA 
0   NM_132416.1  CG2111-RA (CG2111), mRNA 
0   NM_140590.2  CG5027-RA (CG5027), mRNA 
0   NM_136253.2  CG9241-RA (Mcm10), mRNA 
0   NM_166340.1  CG9834-RB, transcript variant B (endoB), mRNA 
0   NM_137566.2  CG9834-RA, transcript variant A (endoB), mRNA 
0   13  17  NM_079534.1  CG1128-RB, transcript variant B (alpha-Est9), mRNA 
0   13  16  NM_169187.1  CG1128-RA, transcript variant A (alpha-Est9), mRNA 
0   29  NM_079535.2  CG1121-RA (alpha-Est8), mRNA 
0   14  NM_135456.2  CG3841-RA (CG3841), mRNA 
0   NM_057677.3  CG1258-RA (pav), mRNA 
0   10  NM_138121.2  CG16932-RA, transcript variant A (Eps-15), mRNA 
0   10  NM_166687.1  CG16932-RB, transcript variant B (Eps-15), mRNA 
0   NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_058135.2  CG10917-RA (fj), mRNA 
0   NM_137058.2  CG12295-RB (stj), mRNA 
0   NM_169389.2  CG5270-RB, transcript variant B (CG5270), mRNA 
0   NM_137863.1  CG13517-RA, transcript variant A (Obp59a), mRNA 
0   NM_176249.1  CG13517-RB, transcript variant B (Obp59a), mRNA 

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