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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10874R-4 
 Symbol CG10874  Full Name CG10874 
 CG No CG10874  Old CG No CG10874 
 Synonyms CG10874 
 Accession No (Link to NCBI) NM_134808.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCGCCCGCCGTTCCGAATATC 
 Primer Seq. 3'
aatctagaggtaccTGGGCACTGGCGTTTGGCATC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCGCCCGCCG TTCCGAATAT CAAAATCAAA GGCATATCCA GCGGCGAGAC CACTCGCAGC 
0061 AGAAACTCGG CCTCCTGCTC CATCGAGAGG ACGATATCCG AAAAGGAGAA GGACAAGAGC 
0121 CAGGGCCAGG GTCAAGCGGC CACCAAGGTG ACCTATGTGA ATGAGCGCCG GCCACGcCCG 
0181 CANGGCgCAC GGCGGCAGTG GCGGGGGTGC CGGCGACGAN AAGATTCGAG TTCAAGACCC 
0241 GGCCGCGCAA ACTCCTGAAA GATCGTGATG AGTTGGAACC CACCACCAAC AGTGCCAACA 
0301 GCCTGAACGC CATCACCTTG GTGAGCAGCG AGTGGCTAGC ACCTGATCCC ACAGCCACAG 
0361 ACAATCACAA CACCCCCAAG AACAACAACA ACGATAGCAC GAAACCCAAC AATAACAATC 
0421 AGCACAGCAA TAGCAATCAG AACACACCGC GATTGCANCG CCGCAAGAAT CCCACAGCGT 
0481 CGATGCCAAA CGCCAGTGCN CCA 
 in silico PCR Fragment
0001 TCGCCCGCCG TTCCGAATAT CAAAATCAAA GGCATATCCA GCGGCGAGAC CACTCGCAGC 
0061 AGAAACTCGG CCTCCTGCTC CATCGAGAGG ACGATATCCG AAAAGGAGAA GGACAAGAGC 
0121 CAGGGCCAGG GTCAAGCGGC CACCAAGGTG ACCTATGTGA ATGAGCGCCG GCCACGCCCG 
0181 CA-GGCGCAC GGCGGCAGTG GCGGGGGTGC CGGCGACGA- AAGATTCGAG TTCAAGACCC 
0241 GGCCGCGCAA ACTCCTGAAA GATCGTGATG AGTTGGAACC CACCACCAAC AGTGCCAACA 
0301 GCCTGAACGC CATCACCTTG GTGAGCAGCG AGTGGCTAGC ACCTGATCCC ACAGCCACAG 
0361 ACAATCACAA CACCCCCAAG AACAACAACA ACGATAGCAC GAAACCCAAC AATAACAATC 
0421 AGCACAGCAA TAGCAATCAG AACACACCGC GATTGCAGCG CCGCAAGAAT CCCACAGCGT 
0481 CGATGCCAAA CGCCAGTGC- CCA 
 Assemble Data

10874R-4.IR_full       1   TCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAGCGGCGAGACCACTCGCAGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     1   TCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAGCGGCGAGACCACTCGCAGC 60


10874R-4.IR_full       61  AGAAACTCGGCCTCCTGCTCCATCGAGAGGACGATATCCGAAAAGGAGAAGGACAAGAGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     61  AGAAACTCGGCCTCCTGCTCCATCGAGAGGACGATATCCGAAAAGGAGAAGGACAAGAGC 120


10874R-4.IR_full       121 CAGGGCCAGGGTCAAGCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     121 CAGGGCCAGGGTCAAGCGGCCACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCG 180


10874R-4.IR_full       181 CANGGCGCACGGCGGCAGTGGCGGGGGTGCCGGCGACGANAAGATTCGAGTTCAAGACCC 240
                           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
10874R-4.in silico     181 CA-GGCGCACGGCGGCAGTGGCGGGGGTGCCGGCGACGA-AAGATTCGAGTTCAAGACCC 240


10874R-4.IR_full       241 GGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACCAACAGTGCCAACA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     241 GGCCGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACCAACAGTGCCAACA 300


10874R-4.IR_full       301 GCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCTAGCACCTGATCCCACAGCCACAG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     301 GCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCTAGCACCTGATCCCACAGCCACAG 360


10874R-4.IR_full       361 ACAATCACAACACCCCCAAGAACAACAACAACGATAGCACGAAACCCAACAATAACAATC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10874R-4.in silico     361 ACAATCACAACACCCCCAAGAACAACAACAACGATAGCACGAAACCCAACAATAACAATC 420


10874R-4.IR_full       421 AGCACAGCAATAGCAATCAGAACACACCGCGATTGCANCGCCGCAAGAATCCCACAGCGT 480
                           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
10874R-4.in silico     421 AGCACAGCAATAGCAATCAGAACACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGT 480


10874R-4.IR_full       481 CGATGCCAAACGCCAGTGCNCCA 503
                           ||||||||||||||||||| |||
10874R-4.in silico     481 CGATGCCAAACGCCAGTGC-CCA 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_134808.2  CG10874-RA, transcript variant A (CG10874), mRNA 
50   241  NM_164458.1  CG10874-RB, transcript variant B (CG10874), mRNA 
0.2   NM_142054.1  CG14365-RA (CG14365), mRNA 
0.2   NM_135340.2  CG8668-RA (CG8668), mRNA 
0.2   NM_141858.1  CG17360-RA (CG17360), mRNA 
0.2   10  NM_164830.3  CG18405-RA, transcript variant A (Sema-1a), mRNA 
0.2   10  NM_001042883.1  CG18405-RC, transcript variant C (Sema-1a), mRNA 
0.2   NM_135399.2  CG18405-RB, transcript variant B (Sema-1a), mRNA 
0.2   NM_132014.2  CG4119-RA (CG4119), mRNA 
0   28  NM_133085.2  CG6606-RA (l(1)G0003), mRNA 
0   NM_001014591.1  CG8103-RB, transcript variant B (Mi-2), mRNA 
0   NM_140897.2  CG8103-RA, transcript variant A (Mi-2), mRNA 
0   NM_132095.2  CG3918-RA (CG3918), mRNA 
0   NM_166992.2  CG2904-RA (ec), mRNA 
0   NM_141785.1  CG4706-RA (CG4706), mRNA 
0   NM_140006.1  CG5751-RA (TrpA1), mRNA 
0   NM_169137.1  CG10295-RC, transcript variant C (Pak), mRNA 
0   NM_169136.1  CG10295-RA, transcript variant A (Pak), mRNA 
0   NM_079942.3  CG10295-RB, transcript variant B (Pak), mRNA 
0   13  NM_139802.2  CG32392-RB, transcript variant B (CG32392), mRNA 
0   NM_137510.2  CG30122-RB (CG30122), mRNA 
0   NM_132086.1  CG15894-RA (CG15894), mRNA 
0   10  27  NM_142444.1  CG18599-RA (CG18599), mRNA 
0   NM_165919.1  CG17759-RA, transcript variant A (Galpha49B), mRNA 
0   NM_165923.1  CG17759-RG, transcript variant G (Galpha49B), mRNA 
0   NM_134503.2  CG14231-RA (CG14231), mRNA 
0   19  NM_140883.1  CG8780-RA (tey), mRNA 
0   15  NM_168276.1  CG7037-RA, transcript variant A (Cbl), mRNA 
0   15  NM_139967.1  CG7037-RB, transcript variant B (Cbl), mRNA 
0   13  NM_139392.1  CG7991-RA (CG7991), mRNA 

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