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NIG-RNAi Strains Detail |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10868R-1 |
Symbol |
orb |
Full Name |
oo18 RNA-binding protein |
CG No |
CG10868 |
Old CG No |
CG10868 |
Synonyms |
151666_s_at, Orb, ORB, oo18, fs(3)00107, CG10868, orb |
Accession No (Link to NCBI) |
NM_079736.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Park J, Lee J, Kim JH, Lee J, Park H, Lim C. ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD. Nucleic Acids Res (2021) 49(19) 11294-11311
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PubMed ID = 34551427
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
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PubMed ID = 29764959
]
[
RRC reference
]
Wu JK, Tai CY, Feng KL, Chen SL, Chen CC, Chiang AS. Long-term memory requires sequential protein synthesis in three subsets of mushroom body output neurons in Drosophila. Sci Rep (2017) 7(1) 7112
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PubMed ID = 28769066
]
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RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
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PubMed ID = 26488612
]
[
RRC reference
]
Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER. Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis. G3 (Bethesda) (2014) 4(2) 297-306
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PubMed ID = 24347626
]
[
RRC reference
]
Pai TP, Chen CC, Lin HH, Chin AL, Lai JS, Lee PT, Tully T, Chiang AS. Drosophila ORB protein in two mushroom body output neurons is necessary for long-term memory formation. Proc Natl Acad Sci U S A (2013) 110(19) 7898-903
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PubMed ID = 23610406
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
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PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACACCCCCGATTGCTCCGGTT |
Primer Seq. 3' |
aatctagaggtaccTGGGTTAGCCGCTGAGGTGTT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACACCCCCGA TTGCTCCGGT TCTGGTGGCA ACATGCGAGC CCTGAGCGGT AGGCTCCACA
0061 ACGGAGTTGC TGCAGAAACA CTCGATAAGC TCCTACCTGG ATCACCACCA TCAGCAGCAG
0121 CAGCAACAGC AGCATCACTT GCAACTGCAG TAACACCAAC AGCAGCACAG TCTGTTGGAG
0181 AGATGCAACG ACGATGGATT GATATCTTTT ATAAACGATC CAATCACACT GAACGATCTA
0241 CTCGGCTTGT GCGGTGCCAG CACTGCCAAT GAAGTGGTCG GTACTGGCCA GACCCCCTCG
0301 ACATCAGCGC CGATACTTGG AGCAGGAGGA GGCGGAAGAG CAAATGGAGT TACAGCCGGC
0361 GCAGCAACGG CAACAGGAGT GGGAGTTGGA GCTGGAGGGA CATTACCTGG GCCAGGAGTT
0421 CCATCGATCC AGGGAGGTGG TGGAGGAGGA GTCGTGGGAC AACAAACCAA TGCCTCGTGC
0481 AACACCTCAG CGGCTAACCC A |
in silico PCR Fragment |
0001 ACACCCCCGA TTGCTCCGGT TCTGGTGGCA ACATGCGAGC CCTGAGCGG- AGGCTCCACA
0061 ACGGAGTTGC TGCAGAAACA CTCGATAAGC TCCTACCTGG ATCACCACCA TCAGCAGCAG
0121 CAGCAACAGC AGCATCACTT GCAACTGCAG CAACACCAAC AGCAGCACAG TCTGTTGGAG
0181 AGATGCAACG ACGATGGATT GATATCTTTT ATAAACGATC CAATCACACT GAACGATCTA
0241 CTCGGCTTGT GCGGTGCCAG CACTGCCAAT GAAGTGGTCG GTACTGGCCA GACCCCCTCG
0301 ACATCAGCGC CGATACTTGG AGCAGGAGGA GGCGGAAGAG CAAATGGAGT TACAGCCGGC
0361 GCAGCAACGG CAACAGGAGT GGGAGTTGGA GCTGGAGGGA CATTACCTGG GCCAGGAGTT
0421 CCATCGATCC AGGGAGGTGG TGGAGGAGGA GTCGTGGGAC AACAAACCAA TGCCTCGTGC
0481 AACACCTCAG CGGCTAACCC A |
Assemble Data |
10868R-1.IR_full 1 ACACCCCCGATTGCTCCGGTTCTGGTGGCAACATGCGAGCCCTGAGCGGTAGGCTCCACA 60
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10868R-1.in silico 1 ACACCCCCGATTGCTCCGGTTCTGGTGGCAACATGCGAGCCCTGAGCGG-AGGCTCCACA 60
10868R-1.IR_full 61 ACGGAGTTGCTGCAGAAACACTCGATAAGCTCCTACCTGGATCACCACCATCAGCAGCAG 120
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10868R-1.in silico 61 ACGGAGTTGCTGCAGAAACACTCGATAAGCTCCTACCTGGATCACCACCATCAGCAGCAG 120
10868R-1.IR_full 121 CAGCAACAGCAGCATCACTTGCAACTGCAGTAACACCAACAGCAGCACAGTCTGTTGGAG 180
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10868R-1.in silico 121 CAGCAACAGCAGCATCACTTGCAACTGCAGCAACACCAACAGCAGCACAGTCTGTTGGAG 180
10868R-1.IR_full 181 AGATGCAACGACGATGGATTGATATCTTTTATAAACGATCCAATCACACTGAACGATCTA 240
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10868R-1.in silico 181 AGATGCAACGACGATGGATTGATATCTTTTATAAACGATCCAATCACACTGAACGATCTA 240
10868R-1.IR_full 241 CTCGGCTTGTGCGGTGCCAGCACTGCCAATGAAGTGGTCGGTACTGGCCAGACCCCCTCG 300
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10868R-1.in silico 241 CTCGGCTTGTGCGGTGCCAGCACTGCCAATGAAGTGGTCGGTACTGGCCAGACCCCCTCG 300
10868R-1.IR_full 301 ACATCAGCGCCGATACTTGGAGCAGGAGGAGGCGGAAGAGCAAATGGAGTTACAGCCGGC 360
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10868R-1.in silico 301 ACATCAGCGCCGATACTTGGAGCAGGAGGAGGCGGAAGAGCAAATGGAGTTACAGCCGGC 360
10868R-1.IR_full 361 GCAGCAACGGCAACAGGAGTGGGAGTTGGAGCTGGAGGGACATTACCTGGGCCAGGAGTT 420
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10868R-1.in silico 361 GCAGCAACGGCAACAGGAGTGGGAGTTGGAGCTGGAGGGACATTACCTGGGCCAGGAGTT 420
10868R-1.IR_full 421 CCATCGATCCAGGGAGGTGGTGGAGGAGGAGTCGTGGGACAACAAACCAATGCCTCGTGC 480
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10868R-1.in silico 421 CCATCGATCCAGGGAGGTGGTGGAGGAGGAGTCGTGGGACAACAAACCAATGCCTCGTGC 480
10868R-1.IR_full 481 AACACCTCAGCGGCTAACCCA 501
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10868R-1.in silico 481 AACACCTCAGCGGCTAACCCA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
5 |
59 |
175 |
NM_079736.2 |
CG10868-RA, transcript variant A (orb), mRNA |
55.18 |
266 |
7 |
46 |
125 |
NM_170063.2 |
CG10868-RD, transcript variant D (orb), mRNA |
55.18 |
266 |
7 |
46 |
125 |
NM_170062.1 |
CG10868-RB, transcript variant B (orb), mRNA |
6.22 |
30 |
372 |
1106 |
2103 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
6.22 |
30 |
372 |
1106 |
2103 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
6.22 |
30 |
372 |
1106 |
2103 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
4.14 |
20 |
47 |
159 |
442 |
NM_169386.1 |
CG17228-RA, transcript variant A (pros), mRNA |
3.31 |
16 |
76 |
283 |
727 |
NM_079903.2 |
CG15319-RB (nej), mRNA |
3.31 |
16 |
20 |
108 |
325 |
NM_176542.1 |
CG7029-RA (CG7029), mRNA |
3.11 |
15 |
93 |
284 |
693 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
3.11 |
15 |
40 |
138 |
371 |
NM_176459.1 |
CG17228-RD, transcript variant D (pros), mRNA |
3.11 |
15 |
40 |
138 |
371 |
NM_079593.3 |
CG17228-RC, transcript variant C (pros), mRNA |
2.9 |
14 |
51 |
151 |
388 |
NM_132004.2 |
CG4136-RA (CG4136), mRNA |
2.9 |
14 |
45 |
211 |
669 |
NM_169696.1 |
CG3992-RA, transcript variant A (srp), mRNA |
2.9 |
14 |
45 |
211 |
666 |
NM_169694.1 |
CG3992-RB, transcript variant B (srp), mRNA |
2.9 |
14 |
45 |
136 |
320 |
NM_132126.1 |
CG3075-RA (CG3075), mRNA |
2.69 |
13 |
42 |
145 |
458 |
NM_134552.3 |
CG1412-RA (RhoGAP19D), mRNA |
2.48 |
12 |
58 |
240 |
503 |
NM_167000.1 |
CG32778-RA (CG32778), mRNA |
2.28 |
11 |
84 |
247 |
565 |
NM_169786.1 |
CG7847-RB, transcript variant B (sr), mRNA |
2.28 |
11 |
41 |
199 |
400 |
NM_078514.2 |
CG9653-RA (brk), mRNA |
2.28 |
11 |
34 |
130 |
200 |
NM_132441.1 |
CG2174-RA, transcript variant A (Myo10A), mRNA |
2.28 |
11 |
34 |
130 |
200 |
NM_001042804.1 |
CG2174-RB, transcript variant B (Myo10A), mRNA |
2.28 |
11 |
32 |
113 |
246 |
NM_057511.3 |
CG3936-RA (N), mRNA |
2.28 |
11 |
31 |
113 |
452 |
NM_132525.1 |
CG15740-RA (CG15740), mRNA |
2.28 |
11 |
29 |
116 |
308 |
NM_080157.2 |
CG11648-RB, transcript variant B (Abd-B), mRNA |
2.28 |
11 |
25 |
128 |
344 |
NM_132412.1 |
CG9817-RA (CG9817), mRNA |
2.07 |
10 |
72 |
226 |
459 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
2.07 |
10 |
72 |
226 |
459 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
2.07 |
10 |
72 |
226 |
459 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
2.07 |
10 |
57 |
312 |
701 |
NM_139493.2 |
CG2083-RA (CG2083), mRNA |
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