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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10799R-2 
 Symbol CG10799  Full Name CG10799 
 CG No CG10799  Old CG No CG10799 
 Synonyms CT30256, CG10799 
 Accession No (Link to NCBI) NM_137015.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCGTCGATCTGTTTTGCTGTT 
 Primer Seq. 3'
aatctagaggtaccTCAGCATTTGGGCAAATCGTG 
 Predicted Fragment Size
381 
 IR fragment full Seq
0001 GCGTCGATCT GTTTTGCTGT TCCTAATCTC CGCCATTGTG CTGAGCGCGG CACTTCCTTT 
0061 GCCCCCAATT TGGGAGGACT CCGAATCGGA TTCCGAGTAT AATGATTATA GTGAGCTATC 
0121 GAAGCAGCAG AATCTGAAGA GCAGTATCGA GAAAACTATC AGCAAGCGAG CTACCAAGGA 
0181 CACTAGTAAC AGCACGGAAG ATGATGAGCT CACGGATGGT AGCAATGAGA ATGTTAACGA 
0241 TAAAATGGAC AGCTCAATGG AATCGTCTTC TATGCTGATC ATGGCATCCG AGGAAGAATC 
0301 GGAGTCCGCT GTCAGAAGGC GCAGGTCTGG TGAGAGGAAC AGGAATATAG GGCTCCTGGC 
0361 CACGATTTGC CCAAATGCTG A 
 in silico PCR Fragment
0001 GCGTCGATCT GTTTTGCTGT TCCTAATCTC CGCCATTGTG CTGAGCGCGG CACTTCCTTT 
0061 GCCCCCAATT TGGGAGGACT CCGAATCGGA TTCCGAGTAT AATGATTATA GTGAGCTATC 
0121 GAAGCAGCAG AATCTGAAGA GCAGTATCGA GAAAACTATC AGCAAGCGAG CTACCAAGGA 
0181 CACTAGTAAC AGCACGGAAG ATGATGAGCT CACGGATGGT AGCAATGAGA ATGTTAACGA 
0241 TAAAATGGAC AGCTCAATGG AATCGTCTTC TATGCTGATC ATGGCATCCG AGGAAGAATC 
0301 GGAGTCCGCT GTCAGAAGGC GCAGGTCTGG TGAGAGGAAC AGGAATATAG GGCTCCTGGC 
0361 CACGATTTGC CCAAATGCTG A 
 Assemble Data

10799R-2.IR_full       1   GCGTCGATCTGTTTTGCTGTTCCTAATCTCCGCCATTGTGCTGAGCGCGGCACTTCCTTT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     1   GCGTCGATCTGTTTTGCTGTTCCTAATCTCCGCCATTGTGCTGAGCGCGGCACTTCCTTT 60


10799R-2.IR_full       61  GCCCCCAATTTGGGAGGACTCCGAATCGGATTCCGAGTATAATGATTATAGTGAGCTATC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     61  GCCCCCAATTTGGGAGGACTCCGAATCGGATTCCGAGTATAATGATTATAGTGAGCTATC 120


10799R-2.IR_full       121 GAAGCAGCAGAATCTGAAGAGCAGTATCGAGAAAACTATCAGCAAGCGAGCTACCAAGGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     121 GAAGCAGCAGAATCTGAAGAGCAGTATCGAGAAAACTATCAGCAAGCGAGCTACCAAGGA 180


10799R-2.IR_full       181 CACTAGTAACAGCACGGAAGATGATGAGCTCACGGATGGTAGCAATGAGAATGTTAACGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     181 CACTAGTAACAGCACGGAAGATGATGAGCTCACGGATGGTAGCAATGAGAATGTTAACGA 240


10799R-2.IR_full       241 TAAAATGGACAGCTCAATGGAATCGTCTTCTATGCTGATCATGGCATCCGAGGAAGAATC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     241 TAAAATGGACAGCTCAATGGAATCGTCTTCTATGCTGATCATGGCATCCGAGGAAGAATC 300


10799R-2.IR_full       301 GGAGTCCGCTGTCAGAAGGCGCAGGTCTGGTGAGAGGAACAGGAATATAGGGCTCCTGGC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10799R-2.in silico     301 GGAGTCCGCTGTCAGAAGGCGCAGGTCTGGTGAGAGGAACAGGAATATAGGGCTCCTGGC 360


10799R-2.IR_full       361 CACGATTTGCCCAAATGCTGA 381
                           |||||||||||||||||||||
10799R-2.in silico     361 CACGATTTGCCCAAATGCTGA 381

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   363  NM_137015.2  CG10799-RA (CG10799), mRNA 
0   NM_138098.2  CG3565-RA (CG3565), mRNA 
0   NM_176441.1  CG32939-RA (CG32939), mRNA 
0   NM_141671.2  CG18542-RA (CG18542), mRNA 
0   NM_132669.1  CG11816-RA (CG11816), mRNA 
0   NM_080338.3  CG6824-RA, transcript variant A (ovo), mRNA 
0   NM_001038742.1  CG6824-RD, transcript variant D (ovo), mRNA 
0   NM_167027.2  CG6824-RC, transcript variant C (ovo), mRNA 
0   NM_167026.2  CG6824-RB, transcript variant B (ovo), mRNA 
0   11  NM_169358.1  CG14685-RA, transcript variant A (Cap-H2), mRNA 
0   11  NM_141757.1  CG14685-RB, transcript variant B (Cap-H2), mRNA 
0   NM_206471.1  CG14685-RD, transcript variant D (Cap-H2), mRNA 
0   NM_169359.1  CG14685-RC, transcript variant C (Cap-H2), mRNA 
0   12  NM_137398.1  CG4954-RA (eIF3-S8), mRNA 
0   NM_167884.1  CG1009-RE, transcript variant E (Psa), mRNA 
0   NM_167883.1  CG1009-RC, transcript variant C (Psa), mRNA 
0   NM_167885.1  CG1009-RA, transcript variant A (Psa), mRNA 
0   NM_139360.2  CG1009-RB, transcript variant B (Psa), mRNA 
0   NM_167886.1  CG1009-RD, transcript variant D (Psa), mRNA 
0   NM_141511.2  CG9667-RA (CG9667), mRNA 
0   NM_141550.2  CG9716-RA (Cyp313b1), mRNA 
0   NM_079268.2  CG10923-RA (Klp67A), mRNA 
0   NM_136186.1  CG16798-RA (CG16798), mRNA 
0   NM_165820.1  CG13211-RB, transcript variant B (CG13211), mRNA 
0   NM_136824.2  CG13211-RA, transcript variant A (CG13211), mRNA 
0   13  NM_132335.2  CG12139-RB (CG12139), mRNA 
0   NM_176356.1  CG9614-RF, transcript variant F (pip), mRNA 
0   NM_143141.2  CG4548-RB, transcript variant B (XNP), mRNA 
0   NM_170228.1  CG4548-RA, transcript variant A (XNP), mRNA 
0   NM_135333.2  CG7392-RA, transcript variant A (Cka), mRNA 

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