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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10743R-3 
 Symbol CG10743  Full Name CG10743 
 CG No CG10743  Old CG No CG10743 
 Synonyms CG10743 
 Accession No (Link to NCBI) NM_140404.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCAGCATTACAGCAAATGGAC 
 Primer Seq. 3'
aatctagaggtaccGCAGTACGGTGCAGTTTTAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCAGCATTAC AGCAAATGGA CGGCCTTATA TCGAGTACCG CGACACAGGC GGGATCCGTT 
0061 TCTATATCCG GAGCAGGGTC TTCCCTGACA CTCAGCGAAC GCAACTTAAT TTCGGCCACT 
0121 AATGTTTTGT CAACAGCTAA GACTNTGGCT CTCGCCCTGC AACAGGTCGG ACTGGCTGCT 
0181 CCAGCACCGG ATCCTGTCAC GGCGGCCATT ATCAGCGACT GGCTGGAGAC GCACATACCT 
0241 CGTCAGGATT CCGACGAGCG TATGNGTCGC CNTGCAACGG GATAAGGAGG GCTTAGCCCT 
0301 GCNAGTATCA GATGCTGGCG GAACGAGTGT CAGAACAAGC GGACAAGATT ATCGAGCTGG 
0361 AGGGTCTGAT AACGGAAAAG AGCCAGCAGT TGTGTACCAA GGAAGAGCAA CTGCAACGAC 
0421 AGATGATTTC TAGTTCCGCC CTCGAGACGC AAAAGCTGGA GCTAATGAGT GCCTTAAGTG 
0481 AACTAAAACT GCACCGTACT GC 
 in silico PCR Fragment
0001 GCAGCATTAC AGCAAATGGA CGGCCTTATA TCGAGTACCG CGACACAGGC GGGATCCGTT 
0061 TCTATATCCG GAGCAGGGTC TTCCCTGACA CTCAGCGAAC GCAACTTAAT TTCGGCCACT 
0121 AATGTTTTGT CAACAGCTAA GACTTTGGCT CTCGCCCTGC AACAGGTCGG ACTGGCTGCT 
0181 CCAGCACCGG ATCCTGTCAC GGCGGCCATT ATCAGCGACT GGCTGGAGAC GCACATACCT 
0241 CGTCAGGATT CCGACGAGCG TATGCGTCGC C-TGCAACGG GATAAGGAGG GCTTAGCCCT 
0301 GC-AGTATCA GATGCTGGCG GAACGAGTGT CAGAACAAGC GGACAAGATT ATCGAGCTGG 
0361 AGGGTCTGAT AACGGAAAAG AGCCAGCAGT TGTGTACCAA GGAAGAGCAA CTGCAACGAC 
0421 AGATGATTTC TAGTTCCGCC CTCGAGACGC AAAAGCTGGA GCTAATGAGT GCCTTAAGTG 
0481 AACTAAAACT GCACCGTACT GC 
 Assemble Data

10743R-3.IR_full       1   GCAGCATTACAGCAAATGGACGGCCTTATATCGAGTACCGCGACACAGGCGGGATCCGTT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     1   GCAGCATTACAGCAAATGGACGGCCTTATATCGAGTACCGCGACACAGGCGGGATCCGTT 60


10743R-3.IR_full       61  TCTATATCCGGAGCAGGGTCTTCCCTGACACTCAGCGAACGCAACTTAATTTCGGCCACT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     61  TCTATATCCGGAGCAGGGTCTTCCCTGACACTCAGCGAACGCAACTTAATTTCGGCCACT 120


10743R-3.IR_full       121 AATGTTTTGTCAACAGCTAAGACTNTGGCTCTCGCCCTGCAACAGGTCGGACTGGCTGCT 180
                           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
10743R-3.in silico     121 AATGTTTTGTCAACAGCTAAGACTTTGGCTCTCGCCCTGCAACAGGTCGGACTGGCTGCT 180


10743R-3.IR_full       181 CCAGCACCGGATCCTGTCACGGCGGCCATTATCAGCGACTGGCTGGAGACGCACATACCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     181 CCAGCACCGGATCCTGTCACGGCGGCCATTATCAGCGACTGGCTGGAGACGCACATACCT 240


10743R-3.IR_full       241 CGTCAGGATTCCGACGAGCGTATGNGTCGCCNTGCAACGGGATAAGGAGGGCTTAGCCCT 300
                           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
10743R-3.in silico     241 CGTCAGGATTCCGACGAGCGTATGCGTCGCC-TGCAACGGGATAAGGAGGGCTTAGCCCT 300


10743R-3.IR_full       301 GCNAGTATCAGATGCTGGCGGAACGAGTGTCAGAACAAGCGGACAAGATTATCGAGCTGG 360
                           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     301 GC-AGTATCAGATGCTGGCGGAACGAGTGTCAGAACAAGCGGACAAGATTATCGAGCTGG 360


10743R-3.IR_full       361 AGGGTCTGATAACGGAAAAGAGCCAGCAGTTGTGTACCAAGGAAGAGCAACTGCAACGAC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     361 AGGGTCTGATAACGGAAAAGAGCCAGCAGTTGTGTACCAAGGAAGAGCAACTGCAACGAC 420


10743R-3.IR_full       421 AGATGATTTCTAGTTCCGCCCTCGAGACGCAAAAGCTGGAGCTAATGAGTGCCTTAAGTG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10743R-3.in silico     421 AGATGATTTCTAGTTCCGCCCTCGAGACGCAAAAGCTGGAGCTAATGAGTGCCTTAAGTG 480


10743R-3.IR_full       481 AACTAAAACTGCACCGTACTGC 502
                           ||||||||||||||||||||||
10743R-3.in silico     481 AACTAAAACTGCACCGTACTGC 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168556.1  CG10743-RB, transcript variant B (CG10743), mRNA 
100   482  NM_140404.1  CG10743-RA, transcript variant A (CG10743), mRNA 
0   NM_132008.3  CG32763-RA (l(1)G0045), mRNA 
0   NM_057768.2  CG7779-RA (Cng), mRNA 
0   NM_206605.1  CG11579-RE, transcript variant E (arm), mRNA 
0   NM_134273.2  CG11579-RB, transcript variant B (arm), mRNA 
0   NM_001038927.2  CG7255-RF, transcript variant F (CG7255), mRNA 
0   NM_001043142.1  CG7255-RH, transcript variant H (CG7255), mRNA 
0   NM_166912.2  CG11579-RC, transcript variant C (arm), mRNA 
0   NM_057318.3  CG11579-RA, transcript variant A (arm), mRNA 
0   NM_057317.3  CG11579-RD, transcript variant D (arm), mRNA 
0   NM_080306.2  CG3443-RB (pcx), mRNA 
0   NM_206561.1  CG33342-RA (CG33342), mRNA 
0   NM_134774.2  CG17646-RA, transcript variant A (CG17646), mRNA 
0   NM_164436.1  CG17646-RB, transcript variant B (CG17646), mRNA 
0   NM_134601.1  CG1718-RA (CG1718), mRNA 
0   NM_130643.2  CG2854-RA (CG2854), mRNA 
0   NM_138984.2  CG5712-RA (ACXD), mRNA 
0   NM_135371.3  CG7627-RA (CG7627), mRNA 
0   NM_169329.1  CG6235-RF, transcript variant F (tws), mRNA 
0   NM_057532.3  CG6235-RA, transcript variant A (tws), mRNA 
0   NM_001042819.1  CG5424-RF, transcript variant F (f), mRNA 
0   NM_078880.2  CG10443-RA (Lar), mRNA 
0   NM_176746.1  CG5424-RC, transcript variant C (f), mRNA 
0   NM_132071.1  CG3774-RA, transcript variant A (CG3774), mRNA 
0   NM_167062.1  CG3774-RB, transcript variant B (CG3774), mRNA 
0   NM_136076.2  CG10621-RA (CG10621), mRNA 
0   NM_001038853.1  CG34021-RA (CG34021), mRNA 
0   NM_132230.2  CG2272-RA (slpr), mRNA 
0   NM_143034.3  CG5808-RA (CG5808), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
 
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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