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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1070R-3 
 Symbol Alh  Full Name Alhambra 
 CG No CG1070  Old CG No CG1070 
 Synonyms Dalf, AF10, l(3)j8C8, l(3)j13A6, CG1070, anon-WO0118547.226, Alh, Alhambra 
 Accession No (Link to NCBI) NM_169172.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244 [ PubMed ID = 27908785 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCGCAGCTCTGGTGGACTTTA 
 Primer Seq. 3'
aatctagaggtaccGAGTTCGGTACGTTGCCCGGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCGCAGCTCT GGTGGACTTT ACCGCTGCCA TGGTGAGCAt gGNGGCCANC gCCGAGGCTG 
0061 AGTCCGCCGA GAGCAACAAC AACCACATCG ACATGGCCGA GTACAAGGAG CACCGCAAGA 
0121 ACAAAAAAAA GAAACGCGAG AAGCGGGAGC GCGAGGGCAA GGAGCACCGG CATCACAAAC 
0181 ACCGTGACCG GGAGCATCGC GAGCATCGAC GACATCGCGA CCGGGATCGG GACAAGGAGC 
0241 GGGATCGGGA GGGACATCAC CACCATCCAA CGCACCACCA CCCCAACAAC AGCCAGCACT 
0301 CGACCTCCGC CTCGTCGTCG CCTTCGTCTG CCTCTACCAC GCCCTCGGCG ACCATCGAAT 
0361 ACGTGGGCGG ATCGGCTTCC GCCTCGCCCT CTTATCTGGG TGGTGGAGCG ACAGGGACGG 
0421 GTGCAGCGGT AGGAGCCACC ACCACATATC CGCACAACTT AAAAATACGC TTCCTGCTTT 
0481 CCGGGCAACG TACCGAACTC  
 in silico PCR Fragment
0001 GCGCAGCTCT GGTGGACTTT ACCGCTGCCA TGGTGAGCAT GGCGGCCACC GCCGAGGCTG 
0061 AGTCCGCCGA GAGCAACAAC AACCACATCG ACATGGCCGA GTACAAGGAG CACCGCAAGA 
0121 ACAAAAAAAA GAAACGCGAG AAGCGGGAGC GCGAGGGCAA GGAGCACCGG CATCACAAAC 
0181 ACCGTGACCG GGAGCATCGC GAGCATCGAC GACATCGCGA CCGGGATCGG GACAAGGAGC 
0241 GGGATCGGGA GGGACATCAC CACCATCCAA CGCACCACCA CCCCAACAAC AGCCAGCACT 
0301 CGACCTCCGC CTCGTCGTCG CCTTCGTCTG CCTCTACCAC GCCCTCGGCG ACCATCGAAT 
0361 ACGTGGGCGG ATCGGCTTCC GCCTCGCCCT CTTATCTGGG TGGTGGAGCG ACAGGGACGG 
0421 GTGCAGCCGT AGGAGCCACC ACCACATATC CGCACAACTT AAAAATACGC TTCCTGCTTT 
0481 CCGGGCAACG TACCGAACTC  
 Assemble Data

1070R-3.IR_full       1   GCGCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGNGGCCANCGCCGAGGCTG 60
                          |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
1070R-3.in silico     1   GCGCAGCTCTGGTGGACTTTACCGCTGCCATGGTGAGCATGGCGGCCACCGCCGAGGCTG 60


1070R-3.IR_full       61  AGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGTACAAGGAGCACCGCAAGA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     61  AGTCCGCCGAGAGCAACAACAACCACATCGACATGGCCGAGTACAAGGAGCACCGCAAGA 120


1070R-3.IR_full       121 ACAAAAAAAAGAAACGCGAGAAGCGGGAGCGCGAGGGCAAGGAGCACCGGCATCACAAAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     121 ACAAAAAAAAGAAACGCGAGAAGCGGGAGCGCGAGGGCAAGGAGCACCGGCATCACAAAC 180


1070R-3.IR_full       181 ACCGTGACCGGGAGCATCGCGAGCATCGACGACATCGCGACCGGGATCGGGACAAGGAGC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     181 ACCGTGACCGGGAGCATCGCGAGCATCGACGACATCGCGACCGGGATCGGGACAAGGAGC 240


1070R-3.IR_full       241 GGGATCGGGAGGGACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     241 GGGATCGGGAGGGACATCACCACCATCCAACGCACCACCACCCCAACAACAGCCAGCACT 300


1070R-3.IR_full       301 CGACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGACCATCGAAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     301 CGACCTCCGCCTCGTCGTCGCCTTCGTCTGCCTCTACCACGCCCTCGGCGACCATCGAAT 360


1070R-3.IR_full       361 ACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTGGTGGAGCGACAGGGACGG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     361 ACGTGGGCGGATCGGCTTCCGCCTCGCCCTCTTATCTGGGTGGTGGAGCGACAGGGACGG 420


1070R-3.IR_full       421 GTGCAGCGGTAGGAGCCACCACCACATATCCGCACAACTTAAAAATACGCTTCCTGCTTT 480
                          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
1070R-3.in silico     421 GTGCAGCCGTAGGAGCCACCACCACATATCCGCACAACTTAAAAATACGCTTCCTGCTTT 480


1070R-3.IR_full       481 CCGGGCAACGTACCGAACTC 500
                          ||||||||||||||||||||
1070R-3.in silico     481 CCGGGCAACGTACCGAACTC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  21  NM_169170.1  CG1070-RC, transcript variant C (Alh), mRNA 
100   482  10  NM_169172.1  CG1070-RB, transcript variant B (Alh), mRNA 
0.2   10  NM_169138.1  CG31367-RA (CG31367), mRNA 
0   17  NM_167239.2  CG32677-RA (CG32677), mRNA 
0   28  35  NM_136069.2  CG10600-RA (CG10600), mRNA 
0   11  30  NM_164977.1  CG6686-RA, transcript variant A (CG6686), mRNA 
0   11  30  NM_135685.2  CG6686-RB, transcript variant B (CG6686), mRNA 
0   NM_165676.1  CG11804-RB, transcript variant B (ced-6), mRNA 
0   NM_001038967.1  CG8927-RB, transcript variant B (CG8927), mRNA 
0   NM_142270.1  CG8927-RA, transcript variant A (CG8927), mRNA 
0   18  NM_132578.1  CG11146-RA (CG11146), mRNA 
0   12  NM_132441.1  CG2174-RA, transcript variant A (Myo10A), mRNA 
0   12  NM_001042804.1  CG2174-RB, transcript variant B (Myo10A), mRNA 
0   12  NM_141297.1  CG2926-RA (CG2926), mRNA 
0   15  NM_001042799.1  CG10966-RB, transcript variant B (rdgA), mRNA 
0   15  NM_078537.2  CG10966-RA, transcript variant A (rdgA), mRNA 
0   NM_141129.1  CG11523-RA (CG11523), mRNA 
0   NM_145761.1  CG16778-RC, transcript variant C (Tkr), mRNA 
0   NM_079141.2  CG16778-RB, transcript variant B (Tkr), mRNA 
0   NM_001014554.1  CG16778-RD, transcript variant D (Tkr), mRNA 
0   NM_138150.2  CG16778-RA, transcript variant A (Tkr), mRNA 
0   NM_142799.1  CG7046-RA (CG7046), mRNA 
0   NM_142798.1  CG7045-RA (CG7045), mRNA 
0   74  NM_132370.1  CG2989-RA (CG2989), mRNA 
0   15  NM_165508.1  CG11084-RA, transcript variant A (pk), mRNA 
0   15  NM_165509.1  CG11084-RB, transcript variant B (pk), mRNA 
0   15  NM_165512.1  CG11084-RC, transcript variant C (pk), mRNA 
0   14  NM_206146.1  CG9635-RF, transcript variant F (RhoGEF2), mRNA 
0   14  NM_057969.3  CG9635-RD, transcript variant D (RhoGEF2), mRNA 
0   12  NM_206147.1  CG9635-RE, transcript variant E (RhoGEF2), mRNA 

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