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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10645R-1 
 Symbol lama  Full Name lamina ancestor 
 CG No CG10645  Old CG No CG10645 
 Synonyms CG10645, lama 
 Accession No (Link to NCBI) NM_168115.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCTGTGGACCAAGCAGGTGGG 
 Primer Seq. 3'
aatctagaggtaccTATCGGCAGCGGCGTTCATCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCTGTGGACC AAGCAGGTGG GCTTCCAGAT TGAAAACTGG AAGCAGCAGA ACGATCTGGT 
0061 CAATATTCCC ACGGGTGTTG GCAGGATTTG TTACAAGGAT TCGGTTTATG AGAATGGTTG 
0121 GGCCCAAATC GAAGTGGAGA CGCAAAGAAC TTATCCGGAT TGGGTGCAGG CCTATGCCGC 
0181 CGGAATGCTG GAAGGCTCGC TGACCTGGAG GAACATCTAC AATCAGTGGT CCAATACCAT 
0241 TTCCTCTTCT TGCGAGCGCG ATGAAAGCAC CCAGAAATTC TGCGGTTGGC TCAGGGACCT 
0301 TTTGACCACC AACTACCATC GCCTGAAGAG GCAGACTGAA AAGGCTGAGA ATGATCACTA 
0361 CTGGCATCAG CTGCATCTGT TCATCACCCA GCTGGAGGGC CTGGAAACTG GCTACAAGCG 
0421 AGGAGCATCC CGGGCACGAT CCGACTTGGA GGAGGAGATA CCATTTTCCG ATTTTCTGCT 
0481 GATGAACGCC GCTGCCGATA  
 in silico PCR Fragment
0001 TCTGTGGACC AAGCAGGTGG GCTTCCAGAT TGAAAACTGG AAGCAGCAGA ATGATCTGGT 
0061 CAACATTCCC ACGGGTGTTG GCAGGATTTG TTATAAGGAT TCGGTTTATG AGAATGGTTG 
0121 GGCCCAAATC GAAGTGGAGA CGCAAAGAAC TTATCCGGAT TGGGTGCAGG CCTATGCCGC 
0181 CGGAATGCTG GAGGGCTCGC TGACCTGGAG GAACATCTAC AATCAGTGGT CCAATACCAT 
0241 TTCCTCTTCT TGCGAGCGCG ATGAAAGCAC CCAGAAATTC TGCGGTTGGC TCAGGGACCT 
0301 TTTGACCACC AACTACCATC GCCTGAAGAG GCAGACTGAA AAGGCTGAGA ATGATCACTA 
0361 CTGGCATCAG CTGCATCTGT TCATCACCCA GCTGGAGGGC CTGGAAACTG GCTACAAGCG 
0421 AGGAGCATCC CGGGCACGAT CCGACTTGGA GGAGGAGATA CCATTTTCCG ATTTTCTGCT 
0481 GATGAACGCC GCTGCCGATA  
 Assemble Data

10645R-1.IR_full       1   TCTGTGGACCAAGCAGGTGGGCTTCCAGATTGAAAACTGGAAGCAGCAGAACGATCTGGT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
10645R-1.in silico     1   TCTGTGGACCAAGCAGGTGGGCTTCCAGATTGAAAACTGGAAGCAGCAGAATGATCTGGT 60


10645R-1.IR_full       61  CAATATTCCCACGGGTGTTGGCAGGATTTGTTACAAGGATTCGGTTTATGAGAATGGTTG 120
                           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
10645R-1.in silico     61  CAACATTCCCACGGGTGTTGGCAGGATTTGTTATAAGGATTCGGTTTATGAGAATGGTTG 120


10645R-1.IR_full       121 GGCCCAAATCGAAGTGGAGACGCAAAGAACTTATCCGGATTGGGTGCAGGCCTATGCCGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     121 GGCCCAAATCGAAGTGGAGACGCAAAGAACTTATCCGGATTGGGTGCAGGCCTATGCCGC 180


10645R-1.IR_full       181 CGGAATGCTGGAAGGCTCGCTGACCTGGAGGAACATCTACAATCAGTGGTCCAATACCAT 240
                           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     181 CGGAATGCTGGAGGGCTCGCTGACCTGGAGGAACATCTACAATCAGTGGTCCAATACCAT 240


10645R-1.IR_full       241 TTCCTCTTCTTGCGAGCGCGATGAAAGCACCCAGAAATTCTGCGGTTGGCTCAGGGACCT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     241 TTCCTCTTCTTGCGAGCGCGATGAAAGCACCCAGAAATTCTGCGGTTGGCTCAGGGACCT 300


10645R-1.IR_full       301 TTTGACCACCAACTACCATCGCCTGAAGAGGCAGACTGAAAAGGCTGAGAATGATCACTA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     301 TTTGACCACCAACTACCATCGCCTGAAGAGGCAGACTGAAAAGGCTGAGAATGATCACTA 360


10645R-1.IR_full       361 CTGGCATCAGCTGCATCTGTTCATCACCCAGCTGGAGGGCCTGGAAACTGGCTACAAGCG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     361 CTGGCATCAGCTGCATCTGTTCATCACCCAGCTGGAGGGCCTGGAAACTGGCTACAAGCG 420


10645R-1.IR_full       421 AGGAGCATCCCGGGCACGATCCGACTTGGAGGAGGAGATACCATTTTCCGATTTTCTGCT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10645R-1.in silico     421 AGGAGCATCCCGGGCACGATCCGACTTGGAGGAGGAGATACCATTTTCCGATTTTCTGCT 480


10645R-1.IR_full       481 GATGAACGCCGCTGCCGATA 500
                           ||||||||||||||||||||
10645R-1.in silico     481 GATGAACGCCGCTGCCGATA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168116.1  CG10645-RC, transcript variant C (lama), mRNA 
100   482  NM_079209.2  CG10645-RB, transcript variant B (lama), mRNA 
100   482  NM_168115.1  CG10645-RA, transcript variant A (lama), mRNA 
0   NM_134730.2  CG5041-RA (Tfb4), mRNA 
0   NM_136536.2  CG2110-RA (Cyp4ad1), mRNA 
0   NM_135226.2  CG11221-RA (CG11221), mRNA 
0   NM_142257.2  CG4287-RA (CG4287), mRNA 
0   NM_169852.1  CG3772-RA (cry), mRNA 
0   NM_164836.1  CG12437-RA, transcript variant A (raw), mRNA 
0   NM_142990.2  CG6432-RA (CG6432), mRNA 
0   NM_142442.1  CG12320-RA (CG12320), mRNA 
0   NM_080018.1  CG6890-RA (Tollo), mRNA 
0   NM_143465.1  CG1973-RA (CG1973), mRNA 
0   NM_001015230.1  CG40155-PA.3 (CG40155), mRNA 
0   NM_135867.2  CG7516-RA (CG7516), mRNA 
0   NM_132019.1  CG4096-RA (CG4096), mRNA 
0   NM_141926.1  CG17639-RA (CG17639), mRNA 
0   NM_166504.1  CG11474-RB, transcript variant B (CG11474), mRNA 
0   NM_137790.1  CG11474-RA, transcript variant A (CG11474), mRNA 
0   NM_165834.1  CG7777-RA, transcript variant A (CG7777), mRNA 
0   NM_136842.2  CG7777-RB, transcript variant B (CG7777), mRNA 
0   NM_079783.2  CG8342-RA (m1), mRNA 
0   NM_135773.2  CG5705-RA (CG5705), mRNA 
0   NM_132476.2  CG1657-RA (CG1657), mRNA 
0   NM_134495.2  CG12234-RA (Ranbp21), mRNA 
0   NM_138163.1  CG7036-RA, transcript variant A (rno), mRNA 
0   NM_206222.1  CG7036-RB, transcript variant B (rno), mRNA 
0   NM_175954.1  CG33123-RA (CG33123), mRNA 
0   NM_132712.1  CG11581-RA (CG11581), mRNA 
0   NM_078774.3  CG13778-RA, transcript variant A (Mnn1), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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