Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10366R-4 |
Symbol |
CG10366 |
Full Name |
CG10366 |
CG No |
CG10366 |
Old CG No |
CG10366 |
Synonyms |
CG10366 |
Accession No (Link to NCBI) |
NM_136151.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
male semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C. An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor. PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGGTGGAGATGCACGCTGCTC |
Primer Seq. 3' |
aatctagaggtaccCTGCTTTTCCTCTGGCGTTAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AGGTGGAGAT GCACGCTGCT CCGGCGGCTC CCCATGTCGA TCGAAATCCC AGCAGCGACT
0061 GGCGACAGTG GTGTCGCCTG TGCGCCAAGG ACGACGTGCA AGGCAACTTG AATGTGTTCC
0121 TCAAGAACGA GGATTCCGGC GAGGCAGCCT CCATGGANAC TGGCCACCGN CATTGGCAAG
0181 TACTTCTGGG TGAATATAAC TCGAGGTGAA GAGCTGCCGG AGACGATATG CAGTGAGTGC
0241 CTGTCGCTGG TCACCTCGCT GGTGAATTTC TCGGAACGGA TTACCCGCGT GCAGAAGCTT
0301 TACTGCATCC TGCAGAGCAC GCCCAGCCAG GAGAGGCCAA ATNCTCCACG AGCTGCGCTC
0361 GAAATTTGGT TTGCTGGACG AGGAGACGCA GACTGAGGTG CACTATGTGG ACAAGAAGCC
0421 GAAGTTGGAT GAACAGCTCG AGTTTCTGCC AGAGGAGTCG CCTTACGAGC TGGCAAACCC
0481 ACTAACGCCA GAGGAAAATG CAG |
in silico PCR Fragment |
0001 AGGTGGAGAT GCACGCTGCT CCGGCGGCTC CCCATGTCGA TCGAAATCCC AGCAGCGACT
0061 GGCGACAGTG GTGTCGCCTG TGCGCCAAGG ACGACGTGCA AGGCAACTTG AATGTGTTCC
0121 TCAAGAACGA GGATTCCGGC GAGGCAGCCT CCATGGA-AC TGGCCACCGC CATTGGCAAG
0181 TACTTCTGGG TGAATATAAC TCGAGGTGAA GAGCTGCCGG AGACGATATG CAGTGAGTGC
0241 CTGTCGCTGG TCACCTCGCT GGTGAATTTC TCGGAACGGA TTACCCGCGT GCAGAAGCTT
0301 TACTGCATCC TGCAGAGCAC GCCCAGCCAG GAGAGGCCAA AT-CTCCACG AGCTGCGCTC
0361 GAAATTTGGT TTGCTGGACG AGGAGACGCA GACTGAGGTG CACTATGTGG ACAAGAAGCC
0421 GAAGTTGGAT GAACAGCTCG AGTTTCTGCC AGAGGAGTCG CCTTACGAGC TGGCAAACCC
0481 ACTAACGCCA GAGGAAAA-G CAG |
Assemble Data |
10366R-4.IR_full 1 AGGTGGAGATGCACGCTGCTCCGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10366R-4.in silico 1 AGGTGGAGATGCACGCTGCTCCGGCGGCTCCCCATGTCGATCGAAATCCCAGCAGCGACT 60
10366R-4.IR_full 61 GGCGACAGTGGTGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCC 120
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10366R-4.in silico 61 GGCGACAGTGGTGTCGCCTGTGCGCCAAGGACGACGTGCAAGGCAACTTGAATGTGTTCC 120
10366R-4.IR_full 121 TCAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGANACTGGCCACCGNCATTGGCAAG 180
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
10366R-4.in silico 121 TCAAGAACGAGGATTCCGGCGAGGCAGCCTCCATGGA-ACTGGCCACCGCCATTGGCAAG 180
10366R-4.IR_full 181 TACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAGACGATATGCAGTGAGTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10366R-4.in silico 181 TACTTCTGGGTGAATATAACTCGAGGTGAAGAGCTGCCGGAGACGATATGCAGTGAGTGC 240
10366R-4.IR_full 241 CTGTCGCTGGTCACCTCGCTGGTGAATTTCTCGGAACGGATTACCCGCGTGCAGAAGCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10366R-4.in silico 241 CTGTCGCTGGTCACCTCGCTGGTGAATTTCTCGGAACGGATTACCCGCGTGCAGAAGCTT 300
10366R-4.IR_full 301 TACTGCATCCTGCAGAGCACGCCCAGCCAGGAGAGGCCAAATNCTCCACGAGCTGCGCTC 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
10366R-4.in silico 301 TACTGCATCCTGCAGAGCACGCCCAGCCAGGAGAGGCCAAAT-CTCCACGAGCTGCGCTC 360
10366R-4.IR_full 361 GAAATTTGGTTTGCTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10366R-4.in silico 361 GAAATTTGGTTTGCTGGACGAGGAGACGCAGACTGAGGTGCACTATGTGGACAAGAAGCC 420
10366R-4.IR_full 421 GAAGTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGGCAAACCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10366R-4.in silico 421 GAAGTTGGATGAACAGCTCGAGTTTCTGCCAGAGGAGTCGCCTTACGAGCTGGCAAACCC 480
10366R-4.IR_full 481 ACTAACGCCAGAGGAAAATGCAG 503
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10366R-4.in silico 481 ACTAACGCCAGAGGAAAA-GCAG 503
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_136151.1 |
CG10366-RA (CG10366), mRNA |
2.07 |
10 |
3 |
6 |
10 |
NM_136107.2 |
CG17568-RA (CG17568), mRNA |
0 |
0 |
9 |
7 |
20 |
NM_141726.1 |
CG6254-RA (CG6254), mRNA |
0 |
0 |
3 |
5 |
6 |
NM_132957.1 |
CG9059-RB, transcript variant B (CG9059), mRNA |
0 |
0 |
3 |
5 |
6 |
NM_167553.1 |
CG9059-RA, transcript variant A (CG9059), mRNA |
0 |
0 |
3 |
3 |
11 |
NM_080191.2 |
CG4148-RA (wek), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_175991.1 |
CG10595-RA, transcript variant A (d), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_205940.1 |
CG10595-RB, transcript variant B (d), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_078805.3 |
CG5838-RA (Dref), mRNA |
0 |
0 |
2 |
3 |
11 |
NM_001014630.1 |
CG33547-RA (Rim), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_169185.1 |
CG31513-RA (CG31513), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_169197.2 |
CG31187-RA (CG31187), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_132483.2 |
CG1737-RA (CG1737), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_167239.2 |
CG32677-RA (CG32677), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_141568.2 |
CG9797-RA (CG9797), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_132346.1 |
CG3003-RB (CG3003), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_079337.2 |
CG9206-RA (Gl), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_078922.2 |
CG4486-RA (Cyp9b2), mRNA |
0 |
0 |
1 |
3 |
13 |
NM_137342.2 |
CG30460-RC, transcript variant C (CG30460), mRNA |
0 |
0 |
1 |
3 |
13 |
NM_206150.1 |
CG30460-RB, transcript variant B (CG30460), mRNA |
0 |
0 |
1 |
3 |
13 |
NM_206149.1 |
CG30460-RA, transcript variant A (CG30460), mRNA |
0 |
0 |
1 |
3 |
7 |
NM_165836.1 |
CG7776-RB, transcript variant B (E(Pc)), mRNA |
0 |
0 |
1 |
3 |
7 |
NM_078974.2 |
CG7776-RA, transcript variant A (E(Pc)), mRNA |
0 |
0 |
1 |
3 |
7 |
NM_206148.1 |
CG30460-RD, transcript variant D (CG30460), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_078681.2 |
CG32540-RA (CCKLR-17D3), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_057981.3 |
CG4063-RA (ebi), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_176557.1 |
CG33106-RB, transcript variant B (mask), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_176556.1 |
CG33106-RA, transcript variant A (mask), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_165571.1 |
CG1877-RC, transcript variant C (lin19), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_165570.1 |
CG1877-RB, transcript variant B (lin19), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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+ |
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DM |
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++ |
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VM |
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++ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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