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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10352R-2 
 Symbol CG10352  Full Name CG10352 
 CG No CG10352  Old CG No CG10352 
 Synonyms CG10352 
 Accession No (Link to NCBI) NM_132533.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCAAGGATGTGACCTTCGTGAC 
 Primer Seq. 3'
aatctagaggtaccTGCCCAAGGTTATGGGCTGAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CAAGNATGTG ACCTTCGTGA CCAACAACAG CATCAGTTCG GTGAAGGAGC ACATCGAGAA 
0061 GTTTGAGAAA CAGGGCCATC TAAAGATTGA TGAGCATCAA ATCGTTCATC CTGCCCAAAC 
0121 CATCTGCGAT CACTTGAGGT CCATTAAATT CGAGGGACTC ATCTACTGCC TGGCCACGTC 
0181 GCCATTCAAG GAAATCCTCG TAAATGCCGG ATTTCGTTTG GCCCAAGAGA ATGGTTCGGG 
0241 AATCATCACG AAGCTGAAGG ATCTGCACGA GGCCATCTTC TCTGGCGAAT CGGTGGATGC 
0301 GGTCATCATC GACGTTGACT TCAACCTGTC GGCGGCCAAG TTGATGCGTG CCCATTTCCA 
0361 GCTACAGAAT CCGAAGTGCC TTTTCCTCGC CGGAGCTGCC GATGCTTTGA TTCCATTTGG 
0421 CNAAGGGTGA AATCATAGGA CCTGGAGCCT TTATCGATGT GGTGGCCCAG GcCGTTGGCC 
0481 GTCAGCCCAT AACCTTGGGC A 
 in silico PCR Fragment
0001 CAAGGATGTG ACCTTCGTGA CCAACAACAG CATCAGTTCG GTGAAGGAGC ACATCGAGAA 
0061 GTTTGAGAAA CAGGGCCATC TAAAGATTGA TGAGCATCAA ATCGTTCATC CTGCCCAAAC 
0121 CATCTGCGAT CACTTGAGGT CCATTAAATT CGAGGGACTC ATCTACTGCC TGGCCACGTC 
0181 GCCATTTAAG GAAATCCTCG TAAATGCCGG ATTTCGTTTG GCCCAAGAGA ATGGTTCGGG 
0241 AATCATCACG AGGCTGAAGG ATCTGCACGA GGCCATCTTC TCTGGCGAAT CGGTGGATGC 
0301 GGTCATCATC GACGTTGACT TCAACCTGTC GGCGGCCAAG TTGATGCGTG CCCATTTCCA 
0361 GCTACAGAAT CCGAAGTGCC TTTTCCTCGC CGGAGCTGCC GATGCTTTGA TTCCATTTGG 
0421 C-AAGGGTGA AATCATAGGA CCTGGAGCCT TTATCGACGT GGTGACCCAG GCCGTTGGCC 
0481 GTCAGCCCAT AACCTTGGGC A 
 Assemble Data

10352R-2.IR_full       1   CAAGNATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATCGAGAA 60
                           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     1   CAAGGATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATCGAGAA 60


10352R-2.IR_full       61  GTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGTTCATCCTGCCCAAAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     61  GTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGTTCATCCTGCCCAAAC 120


10352R-2.IR_full       121 CATCTGCGATCACTTGAGGTCCATTAAATTCGAGGGACTCATCTACTGCCTGGCCACGTC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     121 CATCTGCGATCACTTGAGGTCCATTAAATTCGAGGGACTCATCTACTGCCTGGCCACGTC 180


10352R-2.IR_full       181 GCCATTCAAGGAAATCCTCGTAAATGCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGG 240
                           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     181 GCCATTTAAGGAAATCCTCGTAAATGCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGG 240


10352R-2.IR_full       241 AATCATCACGAAGCTGAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGC 300
                           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     241 AATCATCACGAGGCTGAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGC 300


10352R-2.IR_full       301 GGTCATCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCATTTCCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     301 GGTCATCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCATTTCCA 360


10352R-2.IR_full       361 GCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGCTTTGATTCCATTTGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico     361 GCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGCTTTGATTCCATTTGG 420


10352R-2.IR_full       421 CNAAGGGTGAAATCATAGGACCTGGAGCCTTTATCGATGTGGTGGCCCAGGCCGTTGGCC 480
                           | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
10352R-2.in silico     421 C-AAGGGTGAAATCATAGGACCTGGAGCCTTTATCGACGTGGTGACCCAGGCCGTTGGCC 480


10352R-2.IR_full       481 GTCAGCCCATAACCTTGGGCA 501
                           |||||||||||||||||||||
10352R-2.in silico     481 GTCAGCCCATAACCTTGGGCA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132533.1  CG10352-RA (CG10352), mRNA 
0   14  18  17  NM_132532.2  CG15739-RA (CG15739), mRNA 
0   NM_137196.1  CG12964-RA (CG12964), mRNA 
0   NM_057943.3  CG12249-RA, transcript variant A (mira), mRNA 
0   NM_057944.3  CG12249-RB, transcript variant B (mira), mRNA 
0   NM_057969.3  CG9635-RD, transcript variant D (RhoGEF2), mRNA 
0   NM_206147.1  CG9635-RE, transcript variant E (RhoGEF2), mRNA 
0   NM_206146.1  CG9635-RF, transcript variant F (RhoGEF2), mRNA 
0   11  NM_166019.1  CG18076-RH, transcript variant H (shot), mRNA 
0   NM_166015.1  CG18076-RG, transcript variant G (shot), mRNA 
0   NM_166016.1  CG18076-RB, transcript variant B (shot), mRNA 
0   NM_166017.1  CG18076-RE, transcript variant E (shot), mRNA 
0   NM_079009.2  CG18076-RA, transcript variant A (shot), mRNA 
0   NM_166018.1  CG18076-RC, transcript variant C (shot), mRNA 
0   NM_140061.1  CG3437-RA (CG3437), mRNA 
0   NM_130541.3  CG3638-RC, transcript variant C (CG3638), mRNA 
0   NM_166872.1  CG3638-RD, transcript variant D (CG3638), mRNA 
0   NM_166873.1  CG3638-RB, transcript variant B (CG3638), mRNA 
0   NM_166874.1  CG3638-RA, transcript variant A (CG3638), mRNA 
0   NM_170579.2  CG2098-RC, transcript variant C (ferrochelatase), mRNA 
0   NM_170580.2  CG2098-RB, transcript variant B (ferrochelatase), mRNA 
0   NM_079874.2  CG2098-RA, transcript variant A (ferrochelatase), mRNA 
0   NM_137945.1  CG30414-RA (CG30414), mRNA 
0   NM_133002.1  CG5800-RA (CG5800), mRNA 
0   NM_164741.1  CG4502-RB, transcript variant B (CG4502), mRNA 
0   NM_135259.2  CG4502-RA, transcript variant A (CG4502), mRNA 
0   NM_079560.3  CG8039-RA (mRpL19), mRNA 
0   NM_168195.1  CG32387-RB, transcript variant B (CG32387), mRNA 
0   NM_001043123.1  CG32387-RC, transcript variant C (CG32387), mRNA 
0   NM_168196.1  CG32387-RA, transcript variant A (CG32387), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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