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NIG-RNAi Strains Detail |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10352R-2 |
Symbol |
CG10352 |
Full Name |
CG10352 |
CG No |
CG10352 |
Old CG No |
CG10352 |
Synonyms |
CG10352 |
Accession No (Link to NCBI) |
NM_132533.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD. Zyxin links fat signaling to the hippo pathway. PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAAGGATGTGACCTTCGTGAC |
Primer Seq. 3' |
aatctagaggtaccTGCCCAAGGTTATGGGCTGAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CAAGNATGTG ACCTTCGTGA CCAACAACAG CATCAGTTCG GTGAAGGAGC ACATCGAGAA
0061 GTTTGAGAAA CAGGGCCATC TAAAGATTGA TGAGCATCAA ATCGTTCATC CTGCCCAAAC
0121 CATCTGCGAT CACTTGAGGT CCATTAAATT CGAGGGACTC ATCTACTGCC TGGCCACGTC
0181 GCCATTCAAG GAAATCCTCG TAAATGCCGG ATTTCGTTTG GCCCAAGAGA ATGGTTCGGG
0241 AATCATCACG AAGCTGAAGG ATCTGCACGA GGCCATCTTC TCTGGCGAAT CGGTGGATGC
0301 GGTCATCATC GACGTTGACT TCAACCTGTC GGCGGCCAAG TTGATGCGTG CCCATTTCCA
0361 GCTACAGAAT CCGAAGTGCC TTTTCCTCGC CGGAGCTGCC GATGCTTTGA TTCCATTTGG
0421 CNAAGGGTGA AATCATAGGA CCTGGAGCCT TTATCGATGT GGTGGCCCAG GcCGTTGGCC
0481 GTCAGCCCAT AACCTTGGGC A |
in silico PCR Fragment |
0001 CAAGGATGTG ACCTTCGTGA CCAACAACAG CATCAGTTCG GTGAAGGAGC ACATCGAGAA
0061 GTTTGAGAAA CAGGGCCATC TAAAGATTGA TGAGCATCAA ATCGTTCATC CTGCCCAAAC
0121 CATCTGCGAT CACTTGAGGT CCATTAAATT CGAGGGACTC ATCTACTGCC TGGCCACGTC
0181 GCCATTTAAG GAAATCCTCG TAAATGCCGG ATTTCGTTTG GCCCAAGAGA ATGGTTCGGG
0241 AATCATCACG AGGCTGAAGG ATCTGCACGA GGCCATCTTC TCTGGCGAAT CGGTGGATGC
0301 GGTCATCATC GACGTTGACT TCAACCTGTC GGCGGCCAAG TTGATGCGTG CCCATTTCCA
0361 GCTACAGAAT CCGAAGTGCC TTTTCCTCGC CGGAGCTGCC GATGCTTTGA TTCCATTTGG
0421 C-AAGGGTGA AATCATAGGA CCTGGAGCCT TTATCGACGT GGTGACCCAG GCCGTTGGCC
0481 GTCAGCCCAT AACCTTGGGC A |
Assemble Data |
10352R-2.IR_full 1 CAAGNATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATCGAGAA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
10352R-2.in silico 1 CAAGGATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATCGAGAA 60
10352R-2.IR_full 61 GTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGTTCATCCTGCCCAAAC 120
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10352R-2.in silico 61 GTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGTTCATCCTGCCCAAAC 120
10352R-2.IR_full 121 CATCTGCGATCACTTGAGGTCCATTAAATTCGAGGGACTCATCTACTGCCTGGCCACGTC 180
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10352R-2.in silico 121 CATCTGCGATCACTTGAGGTCCATTAAATTCGAGGGACTCATCTACTGCCTGGCCACGTC 180
10352R-2.IR_full 181 GCCATTCAAGGAAATCCTCGTAAATGCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGG 240
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10352R-2.in silico 181 GCCATTTAAGGAAATCCTCGTAAATGCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGG 240
10352R-2.IR_full 241 AATCATCACGAAGCTGAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGC 300
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10352R-2.in silico 241 AATCATCACGAGGCTGAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGC 300
10352R-2.IR_full 301 GGTCATCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCATTTCCA 360
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10352R-2.in silico 301 GGTCATCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCATTTCCA 360
10352R-2.IR_full 361 GCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGCTTTGATTCCATTTGG 420
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10352R-2.in silico 361 GCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGCTTTGATTCCATTTGG 420
10352R-2.IR_full 421 CNAAGGGTGAAATCATAGGACCTGGAGCCTTTATCGATGTGGTGGCCCAGGCCGTTGGCC 480
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10352R-2.in silico 421 C-AAGGGTGAAATCATAGGACCTGGAGCCTTTATCGACGTGGTGACCCAGGCCGTTGGCC 480
10352R-2.IR_full 481 GTCAGCCCATAACCTTGGGCA 501
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10352R-2.in silico 481 GTCAGCCCATAACCTTGGGCA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_132533.1 |
CG10352-RA (CG10352), mRNA |
0 |
0 |
14 |
18 |
17 |
NM_132532.2 |
CG15739-RA (CG15739), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_137196.1 |
CG12964-RA (CG12964), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_057943.3 |
CG12249-RA, transcript variant A (mira), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_057944.3 |
CG12249-RB, transcript variant B (mira), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_057969.3 |
CG9635-RD, transcript variant D (RhoGEF2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_206147.1 |
CG9635-RE, transcript variant E (RhoGEF2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_206146.1 |
CG9635-RF, transcript variant F (RhoGEF2), mRNA |
0 |
0 |
1 |
5 |
11 |
NM_166019.1 |
CG18076-RH, transcript variant H (shot), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_166015.1 |
CG18076-RG, transcript variant G (shot), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_166016.1 |
CG18076-RB, transcript variant B (shot), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_166017.1 |
CG18076-RE, transcript variant E (shot), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_079009.2 |
CG18076-RA, transcript variant A (shot), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_166018.1 |
CG18076-RC, transcript variant C (shot), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_140061.1 |
CG3437-RA (CG3437), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_130541.3 |
CG3638-RC, transcript variant C (CG3638), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_166872.1 |
CG3638-RD, transcript variant D (CG3638), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_166873.1 |
CG3638-RB, transcript variant B (CG3638), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_166874.1 |
CG3638-RA, transcript variant A (CG3638), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_170579.2 |
CG2098-RC, transcript variant C (ferrochelatase), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_170580.2 |
CG2098-RB, transcript variant B (ferrochelatase), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_079874.2 |
CG2098-RA, transcript variant A (ferrochelatase), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137945.1 |
CG30414-RA (CG30414), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_133002.1 |
CG5800-RA (CG5800), mRNA |
0 |
0 |
1 |
2 |
8 |
NM_164741.1 |
CG4502-RB, transcript variant B (CG4502), mRNA |
0 |
0 |
1 |
2 |
8 |
NM_135259.2 |
CG4502-RA, transcript variant A (CG4502), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_079560.3 |
CG8039-RA (mRpL19), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_168195.1 |
CG32387-RB, transcript variant B (CG32387), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043123.1 |
CG32387-RC, transcript variant C (CG32387), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_168196.1 |
CG32387-RA, transcript variant A (CG32387), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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