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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10303R-2 
 Symbol Osi4  Full Name Osiris 4 
 CG No CG10303  Old CG No CG10303 
 Synonyms CG10303, Osi4 
 Accession No (Link to NCBI) NM_141366.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAGCCTGGCGGCGATTCACAA 
 Primer Seq. 3'
aatctagaggtaccCACCATTTCCTCCCAGGCCAC 
 Predicted Fragment Size
482 
 IR fragment full Seq
0001 NAGCGNGCTG GCGGCGATTC ACAAGCGCAG TGGTGCGAAT TCGTTGGGAG TGGATCCCGA 
0061 GGGCAAGCCT GCGGCGAATC CTGCGGTCAG TGTGGAGAAC ACTGACCCTG CTGGACAAGC 
0121 TGAGCTGGAA GTGCGCAAAC AACGCGAGTT GCCTGTACGG GGTGGCCAAT GGTCTCATGG 
0181 CCTCCTACCG TCGTGGTGAA ACCCTCAAGC TGGGGCTTTT CGACCTGGTC AAGTTGCCCG 
0241 AACTAGATGC TTCTCGGAAG CACAAGTGGG GCACTGGGCG CGGTCTCTCC GGCTTTATGG 
0301 ACTTTGTGAC GGGAAACGCC ATCAGGGTGC CCGTGGGCCC CATGGTCTTC AGTGTTCAGC 
0361 GAGCCGAGGA CGACAGCGAT TATATCGAGG TAGCACTGCT GAAAAAGACC TCCAGCAGCA 
0421 CAGGCCGCCC TGCAGGTCAA TGGAGGAGGA CTACTGGGCG GTGGAGGTGG CCTGGGAGGA 
0481 AATGGTG 
 in silico PCR Fragment
0001 GAGC---CTG GCGGCGATTC ACAAGCGCAG TGGTGCGAAT TCGTTGGGAG TGGATCCCGA 
0061 GGGCAAGCCT GCGGCGAATC CTGCGGTCAG TGTGGAGAAC ACTGA-CCTG CTGGACAAGC 
0121 TGAGCTGGAA GTGCGCAAAC AACGCGAGTT GCCTGTACGG GGTGGCCAAT GGTCTCATGG 
0181 CCTCCTACCG TCGTGGTGAA ACCCTCAAGC TGGGGCTTTT CGACCTGGTC AAGTTGCCCG 
0241 AACTAGATGC TTCTCGGAAG CACAAGTGGG GCACTGGGCG CGGTCTCTCC GGCTTTATGG 
0301 ACTTTGTGAC GGAAAACGCC ATCAGGGTGC CCGTGGGCCC CATGGTCTTC AGTGTTCAGC 
0361 GAGCCGAGGA CGACAGCGAT TATATCGAGG TAGCACTGCT GAAAAAGACC TCCAGCAGCA 
0421 CAGGCCG-CC TGCAGGTCAA TGGAGGAGGA CTACTGGGCG GTGGAGGTGG CCTGGGAGGA 
0481 AATGGTG 
 Assemble Data

10303R-2.IR_full        1   AGCGNGCTGGCGGCGATTCACAAGCGCAGTGGTGCGAATTCGTTGGGAGTGGATCCCGA 59
                            |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico      1   AGC---CTGGCGGCGATTCACAAGCGCAGTGGTGCGAATTCGTTGGGAGTGGATCCCGA 59


10303R-2.IR_full       61  GGGCAAGCCTGCGGCGAATCCTGCGGTCAGTGTGGAGAACACTGACCCTGCTGGACAAGC 119
                           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
10303R-2.in silico     61  GGGCAAGCCTGCGGCGAATCCTGCGGTCAGTGTGGAGAACACTGA-CCTGCTGGACAAGC 119


10303R-2.IR_full       121 TGAGCTGGAAGTGCGCAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGG 179
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     121 TGAGCTGGAAGTGCGCAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGG 179


10303R-2.IR_full       181 CCTCCTACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTTGCCCG 239
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     181 CCTCCTACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTTGCCCG 239


10303R-2.IR_full       241 AACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTCTCTCCGGCTTTATGG 299
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     241 AACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTCTCTCCGGCTTTATGG 299


10303R-2.IR_full       301 ACTTTGTGACGGGAAACGCCATCAGGGTGCCCGTGGGCCCCATGGTCTTCAGTGTTCAGC 359
                           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     301 ACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTGGGCCCCATGGTCTTCAGTGTTCAGC 359


10303R-2.IR_full       361 GAGCCGAGGACGACAGCGATTATATCGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCA 419
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     361 GAGCCGAGGACGACAGCGATTATATCGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCA 419


10303R-2.IR_full       421 CAGGCCGCCCTGCAGGTCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGA 479
                           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
10303R-2.in silico     421 CAGGCCG-CCTGCAGGTCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGA 479


10303R-2.IR_full       481 AATGGTG 486
                           |||||||
10303R-2.in silico     481 AATGGTG 486

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   464  14  NM_141366.2  CG10303-RA (Osi4), mRNA 
0   NM_167278.1  CG11759-RA (Kap3), mRNA 
0   NM_140763.1  CG7408-RB (CG7408), mRNA 
0   NM_132051.1  CG3726-RA (CG3726), mRNA 
0   NM_135184.2  CG9528-RA (retm), mRNA 
0   NM_078915.2  CG2374-RA (lbm), mRNA 
0   NM_176437.1  CG9423-RC, transcript variant C (Kap-alpha3), mRNA 
0   NM_169296.2  CG9423-RB, transcript variant B (Kap-alpha3), mRNA 
0   NM_169295.2  CG9423-RA, transcript variant A (Kap-alpha3), mRNA 
0   NM_133058.2  CG6123-RA (CG6123), mRNA 
0   14  NM_139680.1  CG17150-RA, transcript variant A (CG17150), mRNA 
0   NM_141993.2  CG7518-RB, transcript variant B (CG7518), mRNA 
0   NM_169489.1  CG7518-RA, transcript variant A (CG7518), mRNA 
0   NM_135967.1  CG13272-RA (CG13272), mRNA 
0   NM_168107.1  CG17150-RC, transcript variant C (CG17150), mRNA 
0   NM_167504.1  CG12223-RB, transcript variant B (Dsp1), mRNA 
0   NM_167503.2  CG12223-RA, transcript variant A (Dsp1), mRNA 
0   NM_206762.1  CG12223-RE, transcript variant E (Dsp1), mRNA 
0   NM_080715.3  CG12223-RC, transcript variant C (Dsp1), mRNA 
0   NM_167502.2  CG12223-RD, transcript variant D (Dsp1), mRNA 
0   NM_145106.1  CG6964-RA, transcript variant A (Gug), mRNA 
0   NM_079249.2  CG6964-RB, transcript variant B (Gug), mRNA 
0   NM_176300.1  CG6964-RC, transcript variant C (Gug), mRNA 
0   NM_206303.1  CG6964-RD, transcript variant D (Gug), mRNA 
0   NM_143756.2  CG1548-RA (cathD), mRNA 
0   NM_141645.2  CG9381-RA, transcript variant A (mura), mRNA 
0   NM_169292.2  CG9381-RC, transcript variant C (mura), mRNA 
0   NM_169291.1  CG9381-RB, transcript variant B (mura), mRNA 
0   NM_001014667.1  CG4685-RB, transcript variant B (CG4685), mRNA 
0   NM_001014666.1  CG4685-RC, transcript variant C (CG4685), mRNA 

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