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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10233R-4 
 Symbol uta  Full Name undertaker 
 CG No CG10233  Old CG No CG10233 
 Synonyms 9C4, unnamed, anon-83ABa, uta, CG10233 
 Accession No (Link to NCBI) NM_141263.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Hosono C, Matsuda R, Adryan B, Samakovlis C.
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes.
Nat Cell Biol (2015) 17(12) 1569-76 [ PubMed ID = 26551273 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATGGCCATGGACGACTACGAT 
 Primer Seq. 3' 
aatctagaggtaccTCTGGGAAAGCCGTGCGTGAA 
 Predicted Fragment Size 
480 
 IR fragment full Seq 
0001 ATGGCCATGG ACGACTACGA TGATGACATG AGCAGCGTGG GCGTCGACCA CGGCCCGAAT 
0061 CGAGAACCAG CACCAACAGC ACCCCCACCA GCAGGGTCAG CATGGACACC ACCAACAGGG 
0121 CCAGGGTCAA AGCCAGTACA GCGCAGGGGC GGATCAAAGT GGGCGGATGG CGATACGAGG 
0181 ACGCCAGTCG CTACATCGGC GAGTGGAACC AGCGTGGCCA AAAGCACGGC ATCGGGCATC 
0241 TGCAGTTCGC CGATGGCACC CGCTACGATG GGCAGTTCCA GGAGAGTCTT AGTCAAGGAG 
0301 TGGGCTGCCT CTGGTTCGCG GATGGAGCAA AATACGAAGG CGAGTTTCAT CAGGGCTGGT 
0361 TTCATGGTAA TGGGATCTTC TGGAGAGCCG ATGGAATGAA GTACGAGGGC GAGTTTCGAG 
0421 GCGGCAAGAT CTGGGGCCTG GGATTGCTGA CGTTCCAGGA CTTCACGCAC GGCTTTCCCA 
0481 GA 
 in silico PCR Fragment 
0001 ATGGCCATGG ACGACTACGA TGATGACATG AGCAGCGTGG GCGT-GACCA CGGCCCGAAT 
0061 CGAGAACCAG CACCAACAGC ACCCCCACCA GCAGGGTCAG CATGGACACC ACCAACAGGG 
0121 CCAGGGTCAA AGCCAGTACA GCGCAGGGGC GG-TCAAAGT GGGCGGATGG CGATACGAGG 
0181 ACGCCAGTCG CTACATCGGC GAGTGGAACC AGCGTGGCCA AAAGCACGGC ATCGGGCATC 
0241 TGCAGTTCGC CGATGGCACC CGCTACGATG GGCAGTTCCA GGAGGGTCTT AGTCAAGGAG 
0301 TGGGCTGCCT CTGGTTCGCG GATGGAGCAA AATACGAAGG CGAGTTTCAT CAGGGCTGGT 
0361 TTCATGGTAA TGGGATCTTC TGGAGAGCCG ATGGAATGAA GTACGAGGGC GAGTTTCGAG 
0421 GCGGCAAGAT CTGGGGCCTG GGATTGCTGA CGTTCCAGGA CTTCACGCAC GGCTTTCCCA 
0481 GA 
 Assemble Data 

10233R-4.IR_full       1   ATGGCCATGGACGACTACGATGATGACATGAGCAGCGTGGGCGTCGACCACGGCCCGAAT 60
                           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
10233R-4.in silico     1   ATGGCCATGGACGACTACGATGATGACATGAGCAGCGTGGGCGT-GACCACGGCCCGAAT 60


10233R-4.IR_full       61  CGAGAACCAGCACCAACAGCACCCCCACCAGCAGGGTCAGCATGGACACCACCAACAGGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10233R-4.in silico     61  CGAGAACCAGCACCAACAGCACCCCCACCAGCAGGGTCAGCATGGACACCACCAACAGGG 120


10233R-4.IR_full       121 CCAGGGTCAAAGCCAGTACAGCGCAGGGGCGGATCAAAGTGGGCGGATGGCGATACGAGG 180
                           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
10233R-4.in silico     121 CCAGGGTCAAAGCCAGTACAGCGCAGGGGCGG-TCAAAGTGGGCGGATGGCGATACGAGG 180


10233R-4.IR_full       181 ACGCCAGTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGGCATC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10233R-4.in silico     181 ACGCCAGTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGGCATC 240


10233R-4.IR_full       241 TGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGAGTCTTAGTCAAGGAG 300
                           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
10233R-4.in silico     241 TGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGGTCTTAGTCAAGGAG 300


10233R-4.IR_full       301 TGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACGAAGGCGAGTTTCATCAGGGCTGGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10233R-4.in silico     301 TGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACGAAGGCGAGTTTCATCAGGGCTGGT 360


10233R-4.IR_full       361 TTCATGGTAATGGGATCTTCTGGAGAGCCGATGGAATGAAGTACGAGGGCGAGTTTCGAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10233R-4.in silico     361 TTCATGGTAATGGGATCTTCTGGAGAGCCGATGGAATGAAGTACGAGGGCGAGTTTCGAG 420


10233R-4.IR_full       421 GCGGCAAGATCTGGGGCCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10233R-4.in silico     421 GCGGCAAGATCTGGGGCCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCA 480


10233R-4.IR_full       481 GA 482
                           ||
10233R-4.in silico     481 GA 482



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   462  0  2  4  NM_141263.2  CG10233-RA, transcript variant A (CG10233), mRNA 
67.31   311  2  1  2  NM_169032.1  CG10233-RB, transcript variant B (CG10233), mRNA 
0   0  4  3  6  NM_132132.1  CG4557-RA (CG4557), mRNA 
0   0  3  12  37  NM_167231.3  CG17255-RB, transcript variant B (CG17255), mRNA 
0   0  3  12  37  NM_132403.3  CG17255-RA, transcript variant A (CG17255), mRNA 
0   0  3  5  8  NM_167687.1  CG11943-RB, transcript variant B (CG11943), mRNA 
0   0  3  5  8  NM_134518.2  CG11943-RA, transcript variant A (CG11943), mRNA 
0   0  3  4  5  NM_137150.2  CG10209-RA (CG10209), mRNA 
0   0  3  3  3  NM_079998.2  CG5912-RA (arr), mRNA 
0   0  3  2  3  NM_205947.1  CG3858-RB, transcript variant B (gcm2), mRNA 
0   0  3  2  3  NM_135458.3  CG3858-RA, transcript variant A (gcm2), mRNA 
0   0  2  6  10  NM_166335.2  CG7097-RA, transcript variant A (CG7097), mRNA 
0   0  2  4  43  NM_080025.1  CG11387-RA, transcript variant A (ct), mRNA 
0   0  2  4  3  NM_170161.1  CG31125-RA (CG31125), mRNA 
0   0  2  3  10  NM_143297.1  CG3361-RA (mrt), mRNA 
0   0  2  3  5  NM_206052.1  CG12822-RB, transcript variant B (CG12822), mRNA 
0   0  2  3  5  NM_136483.2  CG12822-RA, transcript variant A (CG12822), mRNA 
0   0  2  3  5  NM_165566.1  CG18853-RA (CG18853), mRNA 
0   0  2  2  10  NM_132831.1  CG8184-RB (CG8184), mRNA 
0   0  2  2  8  NM_142698.1  CG3353-RA (CG3353), mRNA 
0   0  2  2  5  NM_167460.1  CG8944-RA, transcript variant A (CG8944), mRNA 
0   0  2  2  5  NM_132837.1  CG8944-RB, transcript variant B (CG8944), mRNA 
0   0  2  2  5  NM_080528.2  CG9670-RA (fal), mRNA 
0   0  1  7  7  NM_167777.1  CG14619-RC, transcript variant C (CG14619), mRNA 
0   0  1  6  4  NM_136964.2  CG8776-RE, transcript variant E (CG8776), mRNA 
0   0  1  6  3  NM_165937.1  CG8776-RD, transcript variant D (CG8776), mRNA 
0   0  1  6  3  NM_165934.1  CG8776-RA, transcript variant A (CG8776), mRNA 
0   0  1  6  3  NM_165936.1  CG8776-RC, transcript variant C (CG8776), mRNA 
0   0  1  6  3  NM_165935.1  CG8776-RB, transcript variant B (CG8776), mRNA 
0   0  1  5  19  NM_135708.1  CG17211-RA (CG17211), mRNA 

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