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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10217R-2 
 Symbol CG10217  Full Name CG10217 
 CG No CG10217  Old CG No CG10217 
 Synonyms CG10217 
 Accession No (Link to NCBI) NM_142925.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGTCTTCAAGGAGCGATCCAA 
 Primer Seq. 3'
aatctagaggtaccTCTTAAGGAAGCAGCGGTACT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGTCTTCAAG GAGCGATCCA AGGACTGCTA TCACTGTGTC AGGACCATCA TCCGCACCCT 
0061 TAATGTGTTC GAAAAGTTTG AGGGGCCCTG CGTGGGCATA CCCGCTGGAC AGGAACCCAC 
0121 CGTGGACTAT GTGTGTCGTG GTGTTAAGGA TGACCAGCAG TTGATAACGC TCTTTAACGA 
0181 GAACTTTGTG CCCATCAACT GCCGATCGTC GCTGGAGGGA GTGTGGCATT TTACGTACCA 
0241 GAACCGATTC CGATTCACGG GCGTATGCGA TAAGCCCGAC GCTCGCATTC AGTCCTGTCA 
0301 AACGGCAGGA ACGCAGTTCC TCATCCAGAA CCAGAAGTTC AACGTCACCT ATCAGCAGTG 
0361 CGANGGGTAT GGAGGGCACA TTCACCGGCA CCGTGGAGTT CAGCTGCCTG GGCGATTGGT 
0421 TTGTGGGCAA GAACCACTAC TTTgNCGTGG CCAACACAAA GGAGTCGCGT AAGGATGAGA 
0481 AGTACCGCTG CTTCCTTAAG A 
 in silico PCR Fragment
0001 TGTCTTCAAG GAGCGATCCA AGGACTGCTA TCACTGTGTC AGGACCATCA TCCGCACCCT 
0061 TAATGTGTTC GAAAAGTTTG AGGGGCCCTG CGTGGGCATA CCCGCTGGAC AGGAACCCAC 
0121 CGTGGACTAT GTGTGTCGTG GTGTTAAGGA TGACCAGCAG TTGATAACGC TCTTTAACGA 
0181 GAACTTTGTG CCCATCAACT GCCGATCGTC GCTGGAGGGA GTGTGGCATT TTACGTACCA 
0241 GAACCGATTC CGATTCACGG GCGTATGCGA TAAGCCCGAC GCTCGCATTC AGTCCTGTCA 
0301 AACGGCAGGA ACGCAGTTCC TCATCCAGAA CCAGAAGTTC AACGTCACCT ATCAGCAGTG 
0361 CGA-GGGTAT GGAGGGCACA TTCACCGGCA CCGTGGAGTT CAGCTGCCTG GGCGATTGGT 
0421 TTGTGGGCAA GAACCACTAC TTTGCCGTGG CCAACACAAA GGAGTCGCGT AAGGATGAGA 
0481 AGTACCGCTG CTTCCTTAAG A 
 Assemble Data

10217R-2.IR_full       1   TGTCTTCAAGGAGCGATCCAAGGACTGCTATCACTGTGTCAGGACCATCATCCGCACCCT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     1   TGTCTTCAAGGAGCGATCCAAGGACTGCTATCACTGTGTCAGGACCATCATCCGCACCCT 60


10217R-2.IR_full       61  TAATGTGTTCGAAAAGTTTGAGGGGCCCTGCGTGGGCATACCCGCTGGACAGGAACCCAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     61  TAATGTGTTCGAAAAGTTTGAGGGGCCCTGCGTGGGCATACCCGCTGGACAGGAACCCAC 120


10217R-2.IR_full       121 CGTGGACTATGTGTGTCGTGGTGTTAAGGATGACCAGCAGTTGATAACGCTCTTTAACGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     121 CGTGGACTATGTGTGTCGTGGTGTTAAGGATGACCAGCAGTTGATAACGCTCTTTAACGA 180


10217R-2.IR_full       181 GAACTTTGTGCCCATCAACTGCCGATCGTCGCTGGAGGGAGTGTGGCATTTTACGTACCA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     181 GAACTTTGTGCCCATCAACTGCCGATCGTCGCTGGAGGGAGTGTGGCATTTTACGTACCA 240


10217R-2.IR_full       241 GAACCGATTCCGATTCACGGGCGTATGCGATAAGCCCGACGCTCGCATTCAGTCCTGTCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     241 GAACCGATTCCGATTCACGGGCGTATGCGATAAGCCCGACGCTCGCATTCAGTCCTGTCA 300


10217R-2.IR_full       301 AACGGCAGGAACGCAGTTCCTCATCCAGAACCAGAAGTTCAACGTCACCTATCAGCAGTG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     301 AACGGCAGGAACGCAGTTCCTCATCCAGAACCAGAAGTTCAACGTCACCTATCAGCAGTG 360


10217R-2.IR_full       361 CGANGGGTATGGAGGGCACATTCACCGGCACCGTGGAGTTCAGCTGCCTGGGCGATTGGT 420
                           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10217R-2.in silico     361 CGA-GGGTATGGAGGGCACATTCACCGGCACCGTGGAGTTCAGCTGCCTGGGCGATTGGT 420


10217R-2.IR_full       421 TTGTGGGCAAGAACCACTACTTTGNCGTGGCCAACACAAAGGAGTCGCGTAAGGATGAGA 480
                           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
10217R-2.in silico     421 TTGTGGGCAAGAACCACTACTTTGCCGTGGCCAACACAAAGGAGTCGCGTAAGGATGAGA 480


10217R-2.IR_full       481 AGTACCGCTGCTTCCTTAAGA 501
                           |||||||||||||||||||||
10217R-2.in silico     481 AGTACCGCTGCTTCCTTAAGA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_170091.1  CG10217-RB, transcript variant B (CG10217), mRNA 
100   482  NM_142925.1  CG10217-RA, transcript variant A (CG10217), mRNA 
0   NM_144350.1  CG7487-RA (RecQ4), mRNA 
0   10  NM_140919.1  CG7385-RA (CG7385), mRNA 
0   NM_078786.2  CG7851-RA (Scgalpha), mRNA 
0   NM_134832.2  CG15390-RA (CG15390), mRNA 
0   NM_134722.1  CG14339-RA (CG14339), mRNA 
0   NM_165011.2  CG31764-RB, transcript variant B (vir-1), mRNA 
0   NM_165010.2  CG31764-RA, transcript variant A (vir-1), mRNA 
0   NM_001038812.1  CG31764-RD, transcript variant D (vir-1), mRNA 
0   NM_142696.1  CG7000-RA (CG7000), mRNA 
0   NM_139950.1  CG13670-RA (CG13670), mRNA 
0   NM_136534.2  CG2121-RA (CG2121), mRNA 
0   NM_142739.2  CG6678-RA (CG6678), mRNA 
0   NM_136975.2  CG12374-RA (CG12374), mRNA 
0   NM_134484.2  CG14210-RA (CG14210), mRNA 
0   NM_135661.2  CG6509-RB, transcript variant B (CG6509), mRNA 
0   NM_164967.1  CG6509-RA, transcript variant A (CG6509), mRNA 
0   NM_169115.1  CG2017-RB, transcript variant B (CG2017), mRNA 
0   NM_169116.1  CG2017-RC, transcript variant C (CG2017), mRNA 
0   NM_169117.1  CG2017-RD, transcript variant D (CG2017), mRNA 
0   NM_134553.2  CG1812-RA, transcript variant A (CG1812), mRNA 
0   NM_167707.1  CG1812-RB, transcript variant B (CG1812), mRNA 
0   NM_141346.2  CG2017-RA, transcript variant A (CG2017), mRNA 
0   NM_057539.3  CG9310-RA, transcript variant A (Hnf4), mRNA 
0   NM_141808.3  CG17216-RA (KP78b), mRNA 
0   NM_164453.3  CG7254-RA, transcript variant A (GlyP), mRNA 
0   NM_001032048.1  CG7254-RB, transcript variant B (GlyP), mRNA 
0   NM_001032015.1  CG33748-RB, transcript variant B (primo-1), mRNA 
0   NM_001007096.1  CG8742-RB, transcript variant B (Gyc76C), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
++ 
DB
++ 
DC
++ 
DM
VM
 
VB
 
Caspase-3 signal
N
DB
++  
DC
++ 
DM
+- 
VM
 
VB
 
Dcompartment   Penetrance
     

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