|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
10117R-1 |
Symbol |
ttv |
Full Name |
tout-velu |
CG No |
CG10117 |
Old CG No |
CG10117 |
Synonyms |
CG10117, DEXT1, l(2)05282, l(2)00681, P1.15, l(2)k03617, l(2)k00115, ttv, Ext1, Ttv |
Accession No (Link to NCBI) |
|
Inserted Chr. |
ll |
Insertional Mutation |
|
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
|
Reference
[Please submit your publication]
|
Yamamoto-Hino M, Yoshida H, Ichimiya T, Sakamura S, Maeda M, Kimura Y, Sasaki N, Aoki-Kinoshita KF, Kinoshita-Toyoda A, Toyoda H, Ueda R, Nishihara S, Goto S. Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing. Genes Cells (2015) 20(6) 521-42
[
PubMed ID = 25940448
]
[
RRC reference
]
Ueyama M, Takemae H, Ohmae Y, Yoshida H, Toyoda H, Ueda R, Nishihara S. Functional analysis of proteoglycan galactosyltransferase II RNA interference mutant flies. J Biol Chem (2008) 283(10) 6076-84
[
PubMed ID = 18165227
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTGGCCTACGCCTATTTCGGTG |
Primer Seq. 3' |
aatctagaggtaccGAAGATAATGTGGTTCCTGCC |
Predicted Fragment Size |
518 |
IR fragment full Seq |
|
in silico PCR Fragment |
|
Assemble Data |
10117R-1.IR full 1 TGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAAGTCTCACCATTGAGACCCCGTAGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 1 TGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAAGTCTCACCATTGAGACCCCGTAGAG 60
10117R-1.IR full 61 CCCAGCACGAATCGGCCAAGGATGGTGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 61 CCCAGCACGAATCGGCCAAGGATGGTGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCC 120
10117R-1.IR full 121 TGGGCGCCCACGATATGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 121 TGGGCGCCCACGATATGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGG 180
10117R-1.IR full 181 ATAGCTCCAAGCACCTGGTTACCCGNAAACCCGACTGCCGCATGGAGACCTGTTTCGATT 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
10117R-1.in silico 181 ATAGCTCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTTCGATT 240
10117R-1.IR full 241 TTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGGAACCACTTAACTCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 241 TTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGGAACCACTTAACTCAC 300
10117R-1.IR full 301 TGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAAAAGATACTCACTGCCATCCAGGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 301 TGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAAAAGATACTCACTGCCATCCAGGAAT 360
10117R-1.IR full 361 CGAGATATTATACCAGTGATCCCACGGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 361 CGAGATATTATACCAGTGATCCCACGGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCC 420
10117R-1.IR full 421 TGGATCGAGATTCCCTATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 421 TGGATCGAGATTCCCTATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGAT 480
10117R-1.IR full 481 TGCCGTATTGGAACAATGGCAGGAACCACATTATCTTC 518
||||||||||||||||||||||||||||||||||||||
10117R-1.in silico 481 TGCCGTATTGGAACAATGGCAGGAACCACATTATCTTC 518
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
500 |
0 |
0 |
0 |
NM_057883.2 |
tout-velu CG10117-RA (ttv), mRNA |
0 |
0 |
3 |
4 |
2 |
NM_136632.2 |
CG1968-RB, transcript variant B (CG1968), mRNA |
0 |
0 |
3 |
4 |
2 |
NM_165673.1 |
CG1968-RA, transcript variant A (CG1968), mRNA |
0 |
0 |
3 |
2 |
4 |
NM_001032104.1 |
CG33911-RA (CG33911), mRNA |
0 |
0 |
1 |
5 |
3 |
NM_078600.2 |
Netrin-B CG10521-RA (NetB), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_078639.2 |
katanin 80 CG13956-RB, transcript variant B (kat80), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_167488.1 |
katanin 80 CG13956-RA, transcript variant A (kat80), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_142815.2 |
mitochondrial ribosomal protein L45 CG6949-RA (mRpL45), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_135299.2 |
CG7203-RA (CG7203), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_135716.2 |
CG17010-RA, transcript variant A (CG17010), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_078722.2 |
dachsous CG17941-RA (ds), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_165008.1 |
CG17010-RB, transcript variant B (CG17010), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_140879.1 |
CG9392-RA (CG9392), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_169059.1 |
NMDA receptor 1 CG2902-RA (Nmdar1), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_139760.1 |
CG10472-RA (CG10472), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_141953.1 |
CG18554-RA (CG18554), mRNA |
0 |
0 |
0 |
8 |
2 |
NM_142241.1 |
Arpc3A CG4560-RB, transcript variant B (Arpc3A), mRNA |
0 |
0 |
0 |
6 |
15 |
NM_132335.2 |
CG12139-RB (CG12139), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_130546.2 |
CG11409-RB (CG11409), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_079649.2 |
moira CG18740-RA (mor), mRNA |
0 |
0 |
0 |
4 |
11 |
NM_166186.2 |
gprs CG18471-RA (gprs), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_170038.1 |
winged eye CG31151-RB, transcript variant B (wge), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_001043281.1 |
winged eye CG31151-RC, transcript variant C (wge), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_170037.1 |
winged eye CG31151-RA, transcript variant A (wge), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_057614.2 |
Ror CG4926-RA (Ror), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_137896.2 |
CG9849-RA (CG9849), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_080014.2 |
futsch CG3064-RB (futsch), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_140638.2 |
Tyrosyl-tRNA synthetase CG4561-RA (Aats-tyr), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_169676.1 |
CG31150-RA (CG31150), mRNA |
0 |
0 |
0 |
3 |
10 |
NM_137054.1 |
CG6280-RA (CG6280), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_057883.2 |
tout-velu CG10117-RA (ttv), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_137012.1 |
CG4712-RB, transcript variant B (CG4712), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_165975.1 |
CG4712-RA, transcript variant A (CG4712), mRNA |
|
|
|