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BLAST
Parameters
Output format:
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query [translated into protein] vs. DNA database [translated into protein])
tblastn (Protein query vs. DNA database [translated into protein])
Database:
D.ananassae all chromosome. (13,749 sequences)
D.ananassae BAC end. (1,6047 sequences)
D.ananassae EST. (3,452 sequences)
D.ananassae all chromosome is scaffold sequence of r1.3 dated on July 13, 2011.
Please specify the sequence data to reference.
File Upload:
or COPY & PASTE:
Options for BLAST Search
Filter
:
ON
OFF
Expect
:
Matrix
:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
:
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx:
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options
:
Options for BLASTScope
Sort Hits order by
:
Hit Number
bit score
query from
definition
alignment length
Number of Hits
:
All Hits
Limit:
Hits
Number of HSPs
:
All HSPs
Limit :
HSPs
Limit results by alignment length
:
>
Limit results by range of query sequence
:
-
Image width
: